Pocillopora damicornis (lace coral): 113683496
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Entry
113683496 CDS
T05773
Name
(RefSeq) general transcription factor IIH subunit 4-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03022
Basal transcription factors
pdam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113683496
09124 Replication and repair
03420 Nucleotide excision repair
113683496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdam03021
]
113683496
03400 DNA repair and recombination proteins [BR:
pdam03400
]
113683496
Transcription machinery [BR:
pdam03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113683496
DNA repair and recombination proteins [BR:
pdam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113683496
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
SinI
Motif
Other DBs
NCBI-GeneID:
113683496
NCBI-ProteinID:
XP_027056543
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MASAELSGSSFFRHLQCRDLHQYLGSLPSGILDRLYNHPAICLAVFRELPELAKQFVMRT
LFADQPVPETLVAAWVKTDYQKHYIGSINRLKSLRIWKESSGGIPNRLEMNATFRGNLKI
ALCGGGNPWIGSGEQPERDKHARDIPFLDNYSMERWESVLHFMTGYTSSEESAAVSQDVV
RVLVLSGLMKCETPGASPVISPAGFQFLLMDTASQVWYFMIQYLETVEARGMDLVECLSF
LFQISFASLGKDYSTEGMSDSQLKFLQHLREFGLVFQRKRKSRRYYPTRLAINLASAGIG
SSTVSNTDQKGFIVVETNYRLYAYTSSSLQVALVGLFAEILCRFPNMCVGALTRDSVQQA
LSSGISAEQILHFLRTRAHPEMLKKNPIIPPTISDQIRLWELERSRMKFTEGVLYNQFLS
QADFETLKKYAEDLGVLMWANSSKRVIVVSRSGHDDVKRFWKRQKNT
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgctgaattatctgggtcgtcattcttccgacatttacaatgcagagatctt
caccaatatttgggaagcctgccgtctggtatattagaccgattgtacaatcacccagcg
atatgcctagcagttttcagagaattaccagaacttgccaagcaatttgtgatgaggact
ttatttgctgatcagcctgtaccagaaaccctggtagctgcatgggtaaaaacagattac
cagaaacattacataggatctataaacagactgaaaagcctcaggatttggaaagaatca
agtggtggaatacccaacaggcttgaaatgaatgcaaccttccggggcaatctcaagatt
gctctctgtggcggaggaaatccatggataggatctggtgaacaacctgaaagagacaag
catgcacgtgacattccatttcttgataattatagtatggaaaggtgggagtctgttctt
cattttatgactggttatacttcaagtgaggaaagtgcagctgttagtcaggatgttgtc
cgtgtgttggttttatcgggactcatgaaatgtgagacacctggtgcatcaccagttata
agtcctgctggatttcaatttttactcatggacacagcttcacaagtttggtactttatg
atacaatacctggagactgttgaggctcgaggcatggatcttgtggagtgcctgtctttt
ctatttcagattagttttgcaagccttggcaaggactactctacagagggcatgagtgat
tctcaactaaaattcctccaacatctcagggaatttggtcttgtctttcaacgaaagcgc
aagtcaagaagatactatcccactagattagccattaatttggcttcagcaggaataggg
agttcaactgtcagtaacacagatcagaagggctttattgtagttgagacaaactaccgt
ctttatgcatatacaagttcatctctgcaagtagctcttgtaggattgttcgctgagata
ctctgtaggtttccaaacatgtgtgttggtgctttgacaagagacagtgttcagcaggca
ttgtcaagtggaatatcagctgaacagattcttcactttttgaggactagagcacaccct
gaaatgttaaaaaagaatcccatcataccaccaacaataagtgatcaaattcgactctgg
gaactggaaaggagccgaatgaagttcactgaaggtgtgctatacaaccagttcctctca
caagcagattttgaaaccctaaagaagtatgctgaggatcttggtgttctaatgtgggct
aactcatcaaagagagttattgttgttagccgctcaggtcatgatgacgttaaaaggttt
tggaaacgacagaaaaacacgtga
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