Clostridioides difficile 630: CDIF630_00132
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Entry
CDIF630_00132 CDS
T03885
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pdc
Clostridioides difficile 630
Pathway
pdc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDIF630_00132 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdc03021
]
CDIF630_00132 (rpoB)
03400 DNA repair and recombination proteins [BR:
pdc03400
]
CDIF630_00132 (rpoB)
Enzymes [BR:
pdc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDIF630_00132 (rpoB)
Transcription machinery [BR:
pdc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CDIF630_00132 (rpoB)
DNA repair and recombination proteins [BR:
pdc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CDIF630_00132 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AJP09757
LinkDB
All DBs
Position
95455..99171
Genome browser
AA seq
1238 aa
AA seq
DB search
MPHPVTIGKRTRMSFSKIKEIADVPNLIEIQVDSYEWFLKEGLKEVFDDISPIEDYTGNL
ILEFVDYSLDDKPKYDIEECKERDATYCAPLKVKVRLINKETGEIKEQEVFMGDFPLMTE
RGTFVINGAERVIVSQLVRSPGVYYAEERDKTGKRLISSTVIPNRGAWLEYETDSNDVIS
VRVDRTRKQPVTVLLRALGIGTDAEIIDLLGEDERLSATLEKDNTKTVEEGLVEIYKKLR
PGEPPTVESASSLLNALFFDPKRYDLAKVGRYKFNKKLALCYRIMNKISAEDIINPETGE
VFVKAGEKISYDLAKAIQNAGINVVNLLMDDDKKVRVIGNNFVDIKSHIDFDIDDLNIKE
KVHYPTLKEILDGYSDEEEIKEAIKSRIKELIPKHILLDDIIASISYEFNIFYNIGNIDD
IDHLGNRRIRSVGELLQNQVRIGLSRMERVIKERMTVQDMEAITPQALVNIRPVSAAIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRKRAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLGTYAKINEFGFIESPYRKFDKETSTVTDEIHYLTADEEDLFVRAQANEP
LTEDGKFVNHRVVCRTVNGAVEMVPESRVDYMDISPKQVVSVATAMIPFLENDDANRALM
GANMQRQAVPLVRREAPIIGTGIEYRAAKDSGAVVVARNSGIAERVTADEIIIKREDGNR
DRYNLLKFKRSNSGTCINQTPIINKGDQIIKGDVIADGPATDLGEVALGRNCLIAFMTWE
GYNYEDAILINERLVKEDRLSTIHIEEYECEARDTKLGPEEITRDIPNVGDSAIKNLDDR
GIIRIGAEVDSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGII
VDVKVFTRENGDDLSPGVNELVRCYIAKKRKIKVGDKMAGRHGNKGVISRVLPEEDMPFM
ENGTPLDIILNPQGIPSRMNIGQVLEVHLGLAAKTLGWYVATSVFDGANEYDIMDALEEA
GYPRDGKLTLYDGRTGESFDNRITVGYMYYLKLHHLVDEKLHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAHILQEILTVKSDDVVGRVRTYEAIVKGENIPEPGIPES
FKVLIKELQSLCLDVKVLTDEDQEIEVRESVDEDDTIGEFELDVVNHMGEVEESNIIEEI
EDDFAENAEDEDIENLEEFTEDDLFEEEIDFDSDDFDM
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgccacatcctgtcacgataggtaaaagaactagaatgagcttttctaaaattaaggaa
atagctgatgtgccaaatcttatagaaattcaagtagattcctatgagtggtttttaaaa
gaaggtttaaaagaagtgtttgatgatatttcaccaatagaagattatactggtaatctt
atattggaatttgtcgactattctctagatgataaaccaaagtacgatatagaagagtgt
aaagagagagatgctacatattgtgcacctctaaaggttaaggtaagacttataaataaa
gaaacaggtgagataaaagaacaagaagtgtttatgggtgacttccctttaatgacagaa
agaggaactttcgttataaatggagcagaaagagttatagtaagtcaattagttagatct
cctggtgtttactatgcggaagaaagagataaaacaggtaagagattgatttcatctact
gtaattcctaatagaggagcatggttagaatatgaaacagattctaatgatgtaatatct
gtaagagttgatagaacaagaaaacaaccagttacagttttacttagagctttaggaata
ggaacagatgcagagataattgaccttttaggagaagatgagagattatctgctacatta
gaaaaagataatactaagacagtagaagaaggtcttgtagagatatacaaaaaattaaga
ccaggtgaacctcctactgtagaaagtgcatcatctttattaaatgctttattctttgac
ccaaaaagatatgacctagcaaaagttggtagatataaattcaataagaaacttgcttta
tgttatagaataatgaataaaatttcagcagaagacataataaatccagaaactggagaa
gtatttgtaaaagctggagaaaaaataagctatgatttggctaaagccatacaaaatgca
ggtataaatgtagtaaatctactaatggatgatgataaaaaagttagagttataggaaat
aattttgtggatattaagtctcacattgattttgacatagatgatttaaacataaaagaa
aaagtacattatccaactttaaaagaaattttagatggatatagtgatgaagaagaaata
aaagaggctataaaatcaagaattaaagaacttataccaaaacatatattattagatgat
ataatagcttcaataagttatgagttcaatatattctataatataggaaatattgatgat
atagatcacctaggaaacagaagaataagatctgtaggtgaattgttacaaaatcaagtt
agaattggtctttcaagaatggaaagagttataaaagaaagaatgacggttcaagatatg
gaagctataacgcctcaagcgttagttaacataagaccagtttcagctgcaataaaagaa
ttttttggtagttctcagttatctcagttcatggatcaaacaaatcctctatctgagtta
acgcataagagaagattatcagcccttgggcctggaggtctttcaagaaaaagagctgga
ttcgaagtgcgtgacgttcaccattcacactatggtagaatgtgtccaatagagactcca
gagggaccaaatatcggtcttataaactctctaggaacttatgcaaaaataaatgaattt
ggatttatagaatcaccatatagaaaatttgataaagaaacatcaacagttactgatgaa
atacattatttaactgctgacgaagaagatttattcgtaagagctcaggcaaatgagcca
ttaacagaagatggtaaattcgtaaaccatagagttgtttgtagaactgtaaatggtgct
gttgaaatggttcctgaaagtagagtagattacatggatatatctcctaagcaggttgta
tctgttgccactgctatgatacctttcttagaaaatgatgatgccaaccgtgcccttatg
ggagcgaacatgcagcgtcaggcagtgcctctagttagaagagaagcaccaattatagga
actggtatagaatacagagcagcaaaagactctggagcagttgttgttgctagaaattct
ggtatagcagaaagagtaacagcagatgaaataattataaaaagagaagatggaaacaga
gatagatataatctacttaagtttaaacgttcaaactcaggtacttgtataaatcaaaca
cctataataaataagggtgaccagataataaaaggtgatgttatagcagatggtccagca
actgatttaggagaagttgcacttggaagaaactgtcttatagcattcatgacttgggaa
ggttataactacgaggatgctatattaataaatgaaagattagttaaagaagatagatta
tcaacaattcatatagaagaatatgaatgtgaagctagagatacaaaactagggccagag
gaaataactagagatatacctaatgttggagatagtgcaattaagaacttagatgacaga
ggtataataagaataggtgcagaagtagactcaggtgatatattagttggtaaagtaact
ccaaaaggagaaactgaacttactgctgaggaaagattacttcgtgcaatatttggagaa
aaggctagagaagttagagatacttcacttaaagtgcctcatggtgaatctggtataata
gttgatgtaaaagtatttactagagaaaatggagatgatttatctccaggagtaaatgaa
ttagtaagatgctatatagctaaaaagagaaaaataaaagttggagataaaatggctggt
cgtcatggtaataaaggggttatctcaagagtattacctgaagaagatatgccattcatg
gaaaatggaacaccactagacataatacttaacccacaaggtataccatcacgtatgaac
attggtcaggttttagaagttcatttaggacttgctgctaagacattaggatggtatgta
gcaacatcagtattcgatggtgctaatgagtatgacataatggatgctcttgaagaagct
gggtatcctagagatggtaaattaactttatatgatggtagaacaggtgagtcttttgac
aacagaataactgttggatatatgtactacttgaaactacatcacttagtagatgaaaaa
ctacatgcaagaagtactggaccatactcattagttactcaacagccactaggtggtaaa
gcacaatttggtggacaaagatttggagagatggaggtttgggctctggaagcatatgga
gctgctcacatacttcaagaaatacttactgttaagtctgatgacgttgtaggtcgtgtt
agaacatatgaagctatagttaaaggtgaaaatatacctgaaccaggaatcccagaatca
tttaaggttcttataaaagaacttcaaagtttatgcttagatgtaaaagtattgacagat
gaagaccaagaaatagaagtaagagaatctgtggatgaagatgatacaataggtgaattt
gagctagatgttgtaaatcatatgggagaagttgaagaaagtaatataatagaagaaatt
gaagatgattttgcagaaaatgcagaagatgaggatatagagaatttagaagaattcact
gaagatgatttatttgaagaagaaatagattttgatagtgatgactttgatatgtaa
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