Pseudomonas denitrificans (nom. rej.): F1C79_28235
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Entry
F1C79_28235 CDS
T09478
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F1C79_28235 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pden03021
]
F1C79_28235 (rpoB)
03400 DNA repair and recombination proteins [BR:
pden03400
]
F1C79_28235 (rpoB)
Enzymes [BR:
pden01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F1C79_28235 (rpoB)
Transcription machinery [BR:
pden03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F1C79_28235 (rpoB)
DNA repair and recombination proteins [BR:
pden03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F1C79_28235 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QEY75198
UniProt:
A0A9X7N543
LinkDB
All DBs
Position
6064423..6068496
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDQVRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALNYSTEEILNAFYDTNVYEIKGET
LNLELVPSRLRGEIASFDIKDAAGKVIVEAGRRITARHINQLEKAGISQLEVPFDYLIGR
TVAKAVVHPATGEIIAECNTELTVDALAKIAKAQVARLETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GAGVLSKEDIVEVLKTLVAIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVK
EGLVSDDIVFLSAIEEADHVIAQASATLNEKGELIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVQKGD
QVSRSDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALVGAKADGGPALKKGAEITDEYLDGLERGQWFKLRMA
EDALNEQLEKAQAYISDRRQMLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDVHGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKIAELRVFLNEIYNEIGGRQESLDELNDNEILALANNLKGGVPMATP
VFDGAKEREIKAMLKLADLPESGQMRLYDGRTGNQFERTTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtatttgctggccatccagctggattcctatcgcgaattcctgcag
gcgggtgcaagcaaggaccaggtccgagatatcggcctgcatgcggccttcaagtccgtc
ttcccgattatcagctattccggcaatgctgccctggaatacgtcggctaccgtctgggt
gagccggccttcgatgtcaaggaatgcgtgctgcgtggtgtgaccttcgcggtcccgctg
cgtgtgaaagtgcgcctgatcattttcgacaaggaatcgtcgaacaaagcgatcaaggac
atcaaggaacaagaagtctacatgggggaaatccccctgatgaccgagaacggtaccttc
atcatcaacggtaccgagcgcgtcatcgtttcccagctgcaccgctccccgggcgtgttc
ttcgaccacgaccgtggcaagacccacagctccggcaagctgctgtactccgcgcgcatc
attccttaccgcggctcctggctcgacttcgagttcgatccgaaggactgcgtgttcgtt
cgtatcgaccgtcgccgcaaactgccggcttccgtcctgctgcgcgcgctgaactacagc
accgaggaaatcctcaacgcgttctatgacaccaacgtctacgagatcaagggcgagacc
ctgaatctggagctggtgccgtcgcgtctgcgtggcgagatcgccagcttcgacatcaag
gatgctgccggcaaggtcatcgttgaagcgggccgccgtatcaccgcgcgccacatcaat
cagctcgagaaggctggcatcagccagctggaagtgccgttcgactacctgattggccgt
accgtggccaaggctgtcgtgcacccggctaccggcgagatcatcgccgagtgcaacacc
gagctgaccgtcgatgccctggccaagatcgccaaggcccaggttgcgcgcctggaaacc
ctgtacaccaacgacatcgactgcggtccgttcatctccgacacgctgaagatcgactcc
accagcaaccaactggaagcgctggtcgagatctatcgcatgatgcgtcccggcgagccg
ccgaccaaggaagccgccgagaccctgttcggcaacctgttcttcagcgccgagcgttac
gacctgtccgccgttggccgcatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggcgccggcgtcctgagcaaggaagacatcgtcgaggtcctcaagaccctggttgccatc
cgtaacggtaaaggcatcgtcgacgacatcgaccacctgggtaaccgtcgcgtccgttgc
gtcggcgagatggccgagaaccagttccgcgttggcctggtgcgtgtagagcgcgcggtc
aaggaacgtctgtcgatggccgaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggtggctgccgcgatcaaggagttcttcggttccagccagctgtcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgcgtctccgcactcggcccg
ggtggtctgacccgtgagcgcgcgggcttcgaggttcgtgacgtacacccgacccactac
ggtcgcgtgtgcccgatcgaaacccctgaaggtccgaacatcggtctgatcaactccctg
gccacctacgcccgcaccaacaagtacggcttcctcgaaagcccgtaccgcgtggtgaag
gaaggtctggtcagcgacgacatcgtcttcctgtccgcgatcgaagaggccgatcatgtg
atcgcccaggcctccgccaccctgaacgaaaagggtgagctgatcgacgaactggtagcc
gtacgtcacctgaacgaattcaccgtgaaggcgccggaagacgtcaccctcatggacgtg
tcgccgaagcaggtcgtttccgtcgctgcctcgctgattccgttcctcgagcacgacgac
gccaaccgtgcactcatgggttcgaacatgcagcgtcaggctgtaccgaccctgcgcgcc
gacaagccgctggtaggtactggcatggagcgcaacgtcgcccgtgactccggtgtctgc
gtggttgcccgtcgtggcggcgtgatcgactcggtcgacgccagccgtatcgtggtccgc
gtgaacgacgacgaagtcgagactggtgaagccggtgtcgacatctacaacctgaccaag
tacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtgcagaagggtgac
caggtttcgcgcagcgacatcctggccgacggcccgtccaccgacatgggtgaactggct
ctgggtcagaacatgcgcgtagcgttcatgccctggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgcgtggtccaggaagatcgtttcaccacgatccacatccaggaa
ctgacttgcgttgcccgtgacaccaagctcggcccagaagaaatcaccgcggacatcccg
aacgtgggtgaggctgcgctgaacaagctggacgaagctggcatcgtctacgtcggcgcc
gaagtacaggctggcgacatcctggtcggcaaggtcaccccgaaaggcgagacccagctg
actccggaagagaagctgctgcgtgcgatcttcggtgagaaggcgtccgacgtgaaggac
acctccctgcgcgtgccgaccggcaccaagggtaccgtcatcgacgtacaggtcttcacc
cgcgatggcgtggagcgcgacagccgtgccctgtccatcgagaagatgcagctggacgag
atccgcaaggacctgaacgaagagttccgcatcgtcgaaggcgcaaccttcgagcgtctg
cgttccgctctggtcggcgccaaggccgacggcggtcctgccctgaagaaaggcgcagag
atcaccgacgagtacctggacggcctcgagcgcggccagtggttcaagctgcgcatggcg
gaagatgctctgaacgagcagctggagaaggcccaggcctacatcagcgaccgccgtcag
atgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgacgacctggct
ccgggcgtactgaagatcgtcaaggtctacctcgctatcaagcgccgcatccagccgggc
gacaagatggcaggccgccacggtaacaagggtgtggtctcggtgatcatgccggtcgaa
gacatgccgcacgacgtgcatggcactccggtcgacatcgttctgaacccgctgggcgta
ccgtcgcgtatgaacgtcggtcagattctcgaaacccacctgggccttgcggccaagggc
ctgggcgagaagatcaaccgcatgctcgaagagcagcgcaagatcgccgagctgcgtgtg
ttcctgaacgagatctacaacgagatcggcggccgccaggaaagcctggacgagctgaac
gataacgagatcctcgctctggccaacaacctcaagggcggcgtgcccatggctaccccg
gtgttcgacggtgccaaggagcgcgagatcaaggccatgctgaagctggccgatctgccg
gagagcggtcagatgcgtctgtatgacggccgcaccggcaaccagttcgagcgtacgacc
accgttggttacatgtacatgctcaagctgaaccacctggtcgatgacaagatgcacgca
cgttccaccggctcttacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggccagcgtttcggggagatggaggtctgggcgctggaagcctacggtgccgcctac
accctgcaggaaatgctgaccgtgaagtcggacgacgtgaacggccgtaccaagatgtac
aagaacatcgtggacggggatcaccgcatggaggccggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgctcgctcggcatcgatatcgaactggaaaccgaataa
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integrated database retrieval system
