KEGG   Penicillium digitatum: PDIP_15600
Entry
PDIP_15600        CDS       T04849                                 
Name
(RefSeq) TFIIH and nucleotide excision repair factor 3 complexes subunit (Tfb2), putative
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
pdp  Penicillium digitatum
Pathway
pdp03022  Basal transcription factors
pdp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pdp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PDIP_15600
  09124 Replication and repair
   03420 Nucleotide excision repair
    PDIP_15600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdp03021]
    PDIP_15600
   03400 DNA repair and recombination proteins [BR:pdp03400]
    PDIP_15600
Transcription machinery [BR:pdp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PDIP_15600
DNA repair and recombination proteins [BR:pdp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PDIP_15600
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-GeneID: 26229883
NCBI-ProteinID: XP_014537729
UniProt: K9H5X6
LinkDB
Position
Unknown
AA seq 382 aa
MITNPFAASLRQALMGAEDSHSFGVFSQAPEHTLTSIADLDEYARRQWEGVMGYMVGTSA
LSGQRDAVNLSKGVKQLLQAGHLVEIRGNRVDITKDGFGFVLQDVNTQVWHILILYVESA
EAIGMDSVEVLSFLFLLSSLELGSSYDKSHMTSNQLRTLADLADFGIVYQEDADATHFYP
TRLATTLTSDSSALSNPVTGSLTGPVGPSGGSGSGFIIIETNYRLYAYTSSPLQISLISL
FTNLKYRFPNLVTGKITRQSVRRAIEMGITADQIISYLLSHAHPQLRKHSAAQSNGKGIP
ASVLPPTVTDQIRLWQLERDRLRATAGFLFKDFTSLAEYQAPCQYAAEIGVLVWKSDRKR
MFFVTRHEQVAAFLRSQKVGGR
NT seq 1149 nt   +upstreamnt  +downstreamnt
atgatcaccaacccattcgctgcttcgcttcgacaagctctgatgggtgccgaggactct
cactctttcggcgtattctctcaagccccggaacacaccctgacctcgatcgcggatttg
gacgaatatgctaggcgacagtgggaaggtgttatggggtacatggtcggaacgagtgcc
ttgagtgggcagcgcgacgcggtcaatttgagcaagggtgtcaaacagcttctccaagcc
ggacacctagttgagatccgaggcaaccgtgttgacatcaccaaagatgggtttggattt
gtgctccaggacgtcaacacccaggtctggcacatcttgattctttatgtggagagcgcc
gaggccatcggcatggacagcgtcgaggtcctctcgttcctgttcctcctaagcagcctg
gaactcggatcctcttacgacaagagccacatgacatccaaccaactccgcactctcgcg
gacctcgctgattttggtattgtctaccaagaagacgccgacgcgacgcacttctatccc
acccgtctcgcaactacccttacatcggactcgagcgctctgagcaaccctgtcacaggc
tctcttactgggccagtggggccgtctggtggctctggctctgggtttatcatcatcgaa
actaactaccgactctacgcctacacctcatcgcccctacaaatatccctcatctccctc
ttcacaaacctcaaataccgcttccccaatctggtcactggcaaaatcaccagacagtct
gtccgtcgagctatcgagatgggaatcactgccgatcaaataatctcgtacctattatcg
cacgcccacccacagctgcggaaacacagcgctgcccaatccaacggcaagggtatcccg
gcatctgtgctcccgcctactgtgacagatcagatcaggctttggcagctagagcgggat
cgtctccgggccacggcgggctttttgttcaaggatttcacgagcttggccgaatatcag
gccccttgccagtatgccgcggaaattggtgtactggtttggaagtcagatcggaagcgc
atgttctttgtcacaaggcatgagcaggtggctgcatttttgcgcagtcagaaggtaggt
gggaggtaa

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