Penicillium digitatum: PDIP_34990
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Entry
PDIP_34990 CDS
T04849
Name
(RefSeq) 3' exoribonuclease family protein (Rrp42), putative
KO
K12589
exosome complex component RRP42
Organism
pdp
Penicillium digitatum
Pathway
pdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDIP_34990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_34990
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PDIP_34990
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PDIP_34990
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
26231817
NCBI-ProteinID:
XP_014535331
UniProt:
K9GTU0
A0A7T7BK30
LinkDB
All DBs
Position
Unknown
AA seq
384 aa
AA seq
DB search
MSNQRQASSASQVPHLSPAELSYLYTSLSLPKNPIRPDGRSPTQFRPLSAETTILPGTNG
SARIGFADGTQAIVGVKAEVEKTVLAADTLDSRSLAQHGDALNRESEQGSAAVSGQGEWV
QMSIEIPGFRDDDALPVFLSEMMRESLVGSVAGGNGDAAKEMAGGLKGRLVINKRWHWRL
YIDVLLLSQPLAYPLPLLSLTTHLALLSTKLPKLKSTGEEDPFFDDDWAAAEYLYPRSNT
SKSSLSAAPTYPVRPPVTLLVISVGDNVIFDPNREEIAVADAVLAISVTRSSDSETLKLL
SIRSIDPPSRLTQPGIPNSENVNMLGATAVPGEEAGGQEEVEGVWRPRRGGVKRSVIARM
VKTVLGKGGVGEEVLEGLEGVEVQ
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatcaaagacaagcttcctctgcctctcaagtcccccacctctcacccgccgaa
ctttcctacctctacacctccctcagcctccccaagaacccaatccgaccagatggccgc
tcacccacacaatttcgccctctctccgctgagaccactatcttgcccggcacgaacggt
agtgcgcgtatcgggttcgccgacggcacgcaagcgatcgtcggtgtgaaagcagaagtt
gagaagaccgtcctcgcagccgacacgctcgactcgcgcagcctggcgcaacatggcgac
gcactgaaccgcgagagtgagcagggctcagctgctgtctcggggcagggagagtgggtg
cagatgtcgattgagatccctgggtttagagacgatgatgccctgcctgtgtttttgagt
gagatgatgcgggaaagtctggtcggttctgttgccggtgggaatggggatgccgcgaag
gagatggccggtggtctgaaggggagacttgttatcaacaagcggtggcattggcgcttg
tatattgatgtcctactcctctctcaacccctcgcataccccctccccctcctctcgctc
acaacccacctcgccctcctcagcacgaagctaccgaaactgaagtccacgggcgaggaa
gaccccttctttgacgatgactgggctgccgcggagtacctatacccacgctccaatact
tccaaatcttctctctccgccgcaccaacataccccgtccgcccacctgtaacgctgctc
gtgatctccgtcggcgacaacgtcatcttcgaccctaaccgcgaagaaatcgccgtcgca
gatgccgtcctggccatatccgttacgcgcagcagtgactctgagactttgaaactgctc
tcgatccgctcgatcgatccaccatcccgccttactcagcccggtatccctaattctgag
aatgttaatatgcttggtgctactgcggtgcctggcgaggaggccggcggtcaggaagag
gtcgaaggtgtctggcgtccgcgaagaggcggtgtcaagcgcagtgtcattgcacgtatg
gtcaagactgttcttggcaagggcggtgttggggaggaggtccttgagggccttgagggg
gtcgaggtgcaatga
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