Pseudomonas sp. ATCC 13867: H681_04585
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Entry
H681_04585 CDS
T02524
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pdr
Pseudomonas sp. ATCC 13867
Brite
KEGG Orthology (KO) [BR:
pdr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pdr03016
]
H681_04585
Enzymes [BR:
pdr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H681_04585
Transfer RNA biogenesis [BR:
pdr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H681_04585
Prokaryotic type
tRNA splicing ligases
H681_04585
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AGI22797
LinkDB
All DBs
Position
complement(998415..999635)
Genome browser
AA seq
406 aa
AA seq
DB search
MSSTPYQLLEVAHGKPIKLWTAGVPVEDDARRQLLNTAKMPFIFRHLAVMPDVHLGKGST
IGSVIPTQGAIIPAAVGVDIGCGMIAARTSLVASDLPDNLHGLRSAIEKAVPHGKTFGRR
DQGAWEHVPAHADEAWRSLAGRFKAITGKYPRLEKTNNRHHLGTLGTGNHFIEVCLDEAD
RVWFMLHSGSRGVGNAIGNLFIELAQADMRQHIANLPDRDLAYFEEGSRHFDDYVEAVGW
AQDFARQNRELMMRAVIAAARQVIRKPFDASLEAVNCHHNYVQKERHFGEEVLVTRKGAV
SAQKGQLGIIPGSMGARSFIVRGLGNEEAFCSCSHGAGRTMSRTQAKKRFSVADQVRATA
HVECRKDKDVIDEIPMAYKDIEAVMNAQRDLVEVLHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcacgccctatcaactgctggaagtcgcccacggcaagccgatcaagctgtgg
actgccggcgtaccggtggaggacgacgcgcgccggcaactgctgaacaccgcgaagatg
cccttcatcttcagacacctggccgtgatgccggacgttcacctgggcaagggctcgacc
atcggcagcgtgatccctacccagggcgcgatcatcccggccgccgtcggcgtggacatt
ggctgcggcatgatcgcggcgcgcacctcgctggtggcttccgacctgccggacaatctg
cacggcctgcgcagcgccatcgagaaggccgtgccccacggcaagaccttcggccgccgc
gaccagggcgcctgggaacacgtgccggcgcacgccgatgaggcgtggagatcactggcc
gggcgcttcaaggcaatcaccggcaagtacccgaggctggaaaagaccaacaaccgccat
cacctgggcaccctgggaaccggcaaccatttcatcgaagtctgcctcgacgaggccgac
cgcgtctggttcatgctgcacagcggctcgcgcggcgtcggcaacgccatcggcaatctg
ttcatcgagctggcccaggccgacatgcgccagcacatcgccaacctgcctgaccgggac
ctggcgtacttcgaggaaggcagtcggcatttcgacgactacgtggaagccgtgggctgg
gcccaggacttcgcccggcagaaccgcgaactgatgatgcgcgccgtgatcgccgccgcg
aggcaggtgatccgcaaaccgttcgatgccagcctggaagcggtgaactgccaccacaac
tacgtgcagaaggagcgtcacttcggcgaagaggtactggtgactcgcaagggcgcggtg
tccgcgcagaagggccagctcggtatcatccccggttcgatgggcgcccggagcttcatc
gtccgtggcctgggcaacgaagaggccttctgctcctgcagccacggcgccggccggacc
atgagccggacccaggcgaagaaacgcttcagcgtggcggaccaggtgcgcgccaccgcg
catgtcgaatgtcgcaaggacaaggacgtgatcgacgagatcccgatggcctacaaggac
atcgaggcggtgatgaacgcccagcgcgacctggtggaggtgctgcacaccctgcgccag
gtggtctgcgtgaaaggctga
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