Pseudomonas sp. ATCC 13867: H681_22145
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Entry
H681_22145 CDS
T02524
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
pdr
Pseudomonas sp. ATCC 13867
Pathway
pdr02024
Quorum sensing
pdr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H681_22145 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
H681_22145 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdr03019
]
H681_22145 (hfq)
03036 Chromosome and associated proteins [BR:
pdr03036
]
H681_22145 (hfq)
Messenger RNA biogenesis [BR:
pdr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
H681_22145 (hfq)
Chromosome and associated proteins [BR:
pdr03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
H681_22145 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Motif
Other DBs
NCBI-ProteinID:
AGI26296
UniProt:
M4X3Z9
LinkDB
All DBs
Position
complement(4948522..4948770)
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AA seq
82 aa
AA seq
DB search
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVRLPSGDQPAEPGNV
NT seq
249 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagggcattcgctacaagacccttacctcaataccctgcgcaaagagcgcgtc
ccggtttccatctatctggtcaacggcatcaagttgcaggggcagatcgaatccttcgac
cagttcgttattctgctgaagaacactgtcagccagatggtctacaagcacgctatctcc
accgttgttcccagccgtccggtgcgtctgcccagcggtgatcagccggccgagccgggc
aacgtttga
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