Photobacterium damselae subsp. damselae: CAY62_00460
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Entry
CAY62_00460 CDS
T04927
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pds
Photobacterium damselae subsp. damselae
Pathway
pds03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pds00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAY62_00460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pds03021
]
CAY62_00460
03400 DNA repair and recombination proteins [BR:
pds03400
]
CAY62_00460
Enzymes [BR:
pds01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAY62_00460
Transcription machinery [BR:
pds03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAY62_00460
DNA repair and recombination proteins [BR:
pds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAY62_00460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
FapA
DUF7073
Cas_Cas2CT1978
DUF6155
Motif
Other DBs
NCBI-ProteinID:
ARR48202
LinkDB
All DBs
Position
I:91915..95940
Genome browser
AA seq
1341 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDAPYLLSIQLDSFQKFIEQDPEGHYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVMYDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDSVFVRIDRRRKLPASIILRALGYTTDQILDMFFEKVKFEVQGKSLVME
LVPDRLRGETASFDIEANGTVYVEKGRRITARHIRQLAKDGVDHIEVPVEYIVGKVAAKD
YVNEATGELIAAANQELSLESLALLSQAGHKSIEVLFTNDLDHGPYMSDTLRIDSTTDRL
SALVEIYRMMRPGEPPTREAAEQLFESLFFSEERYDLSAVGRMKFNSSLLRDETTGPGTL
DNQDIIDVMRKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSVFARCNPYGFLETPYRKVVDGKVS
EEIEYLSAIEEGQYVIAQANAALNEDGSFADELITARQKGDSGLHPRDHVQYMDVATNQV
VSVAASLIPFLEHNDANRALMGANMQRQAVPTIRADKPLVGTGIERQIGVDSGVTAVAKR
GGQVQFVDASRIVIKVNDDELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMVGEPVARG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRLTTIHIQELSCVA
RDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPGSVTGTVIDVQVFTRDGVEKDKRALEIEEMQLKEAKKDL
TEEFQILEGGLLARVRTLLLASGYSEDKIASMDREKLFVQTLDDEALQNQLEQLAEQYDE
LKAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQTVDIVLNPLGVPSRMNIGQILETHLGLAAKGIGDKINEMMKQQQELHK
IREFLQRVYDLGDTRQKVDIALLSDEEVLTLAQNLRKGLPIATPVFDGAPEASIKELLQL
GDLPSSGQLQLFDGRTGNPFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPE
SFNVLLKEIRSLGINIELEDE
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgtatccgtaaggattttggtaagcgtccacaa
gttttggatgcaccatacttgctgtcgatccagcttgattctttccaaaaattcatcgag
caggatccagaagggcattacggtctagaagctgcttttcgctctgttttccctatccag
agctacaatggcaattccgagctgcaatacgttagctatcgtctcggcgagccggtcttc
gatgtgaaagaatgtcagattcgtggcgttacttactcagctccacttcgtgtgaagctt
cgtcttgttatgtatgataaagacgcgccggctggaaccgtaaaagacattaaagaacaa
gaagtgtacatgggtgaaattccactcatgactgataacggtacgttcgttattaacgga
accgagagggttatcgtatcccagttgcaccgtagcccgggtgtcttcttcgacagcgat
aagggtaagacccactcctcaggtaaagtgctatataacgcgcgcgtaatcccataccgt
ggttcatggttggatttcgaattcgatcctaaggatagtgtttttgtccgtatcgaccgt
cgtcgtaagcttcctgcatcaattattctacgtgcactaggttacactacagaccaaatc
cttgacatgttcttcgagaaagtgaagttcgaagttcaaggtaaatctctagtgatggaa
cttgttcctgatcgcctacgtggtgaaactgcaagctttgatatcgaagctaacggcact
gtatacgtagaaaaaggtcgtcgtattactgctcgtcatattcgtcaactagcgaaagac
ggcgtagatcatatcgaagtacctgttgaatacatcgttggcaaagttgctgctaaagac
tacgttaacgaagcaactggcgaactgattgctgctgcaaaccaagagctaagcctagaa
tctctagcgctattgtctcaggcaggccacaagtctattgaagttctatttacgaacgat
ctagaccacggtccatacatgtctgatacgctacgtattgatagcacaacagaccgccta
agtgcgttagtagaaatctaccgcatgatgcgtcctggcgagccaccaacacgtgaagca
gcagaacaactgtttgaaagcttattcttctcagaagagcgttacgatctatctgctgta
ggtcgtatgaagttcaacagttctctacttcgtgatgagactacaggcccaggcactcta
gacaaccaagacatcatcgatgtgatgcgtaagctgatcgatattcgtaatggtaaaggt
gaagttgatgatatcgaccaccttggtaaccgtcgtatccgttcagttggcgaaatggct
gagaaccaattccgcgttggtctagttcgtgttgagcgtgcagttaaagagcgtctaagc
cttggtgaccttgatgcaatcatgcctcaagatcttatcaacgctaagcctatttctgcg
gcagttaaagagttctttggctcttctcagctgtctcagtttatggaccagaacaaccca
ctgtcagaagttactcacaaacgtcgtatctcggcgcttggtccaggtggtctgactcgt
gagcgtgctggtttcgaagttcgagacgttcacgcaacgcactacggtcgtctatgtccg
atcgaaacgcctgaaggtccaaacatcggtttgatcaactcgctatctgtatttgcgcgt
tgtaacccatacggcttcttagaaactccataccgcaaagtggtagatggtaaagtttct
gaagagatcgaatacctatcagcaattgaagaaggtcaatacgttattgcacaggcaaac
gccgcgcttaacgaagatggctcttttgctgatgaactgatcactgctcgtcagaaaggt
gattcaggtctgcacccacgtgaccatgttcagtacatggacgttgcaactaatcaggtt
gtatctgtggcggcatctctgatcccattcctagaacacaacgatgctaaccgtgcccta
atgggtgcgaacatgcaacgtcaggcagttccaactatccgtgctgataagccgctagta
ggtactggtattgaacgtcaaatcggtgttgattcaggtgttactgccgtagctaaacgt
ggtggtcaagttcagtttgtagatgcatctcgtatcgttatcaaagttaacgatgatgag
ttgatccctggtgaagcaggtatcgatatctacaacctaactaaatacactcgttctaac
cagaacacatgtattaatcagcgtccatgtgtaatggttggtgaaccagttgctcgtggc
gatgtgctagctgatggtccatcaacagaccttggtgaactagcgcttggtcaaaacatg
cgtatcgcgttcatgccttggaacggttacaacttcgaggactccatccttgtttcagag
cgtgttgttcaggaagatcgcctaacaacaatccacatccaagagctttcttgtgtggcg
cgtgatactaagctaggtgctgaagaaattactgccgatatccctaacgtgggtgaagca
gcgctttctaagctggacgaatcaggtattgtttacattggtgctgaagttaagggtggc
gacatcctagttggtaaagtgacacctaagggtgaaactcagctaactcctgaagagaag
ctactacgtgctatcttcggtgaaaaagcgtctgatgttaaagattcatctctacgcgtt
cctggtagtgtgactggtactgttatcgatgtacaagtattcactcgtgatggcgtagaa
aaagacaagcgtgctcttgaaatcgaagagatgcagctaaaagaagcgaagaaagatctt
acagaagaattccagatccttgagggtggtcttcttgctcgtgttcgtactcttctgctt
gcttctggttacagtgaagacaagattgcttcaatggaccgtgagaagctatttgttcag
actcttgatgatgaagcactacagaaccagttggaacagcttgcagagcagtatgatgaa
ctgaaagctgagttcgataagaagtttgagactaagcgtcgtaagatcactcaaggtgat
gacctagcaccaggcgtactaaagattgttaaagtatacctagctgttaagcgtcgtatt
caaccaggtgataagatggcgggtcgtcacggtaacaagggtgttatctctaagatcaac
cctgttgaagacatgccgtacgatgagaaaggtcaaactgttgatatcgtactgaaccca
ctgggcgtaccatctcgtatgaacatcggtcagatcctagagactcacttaggtcttgcg
gcgaaaggtatcggtgacaagatcaacgagatgatgaagcagcagcaggaacttcacaag
attcgtgaattcctacagcgtgtatacgatctaggcgatactcgtcagaaagtagacatt
gctctgctatcagacgaagaagtgctgactcttgctcagaaccttcgtaaaggtctacca
attgcaacacctgtatttgatggtgctcctgaagcgtcaatcaaagagttgctacaactt
ggtgatcttccatcgtctggtcagcttcagttgttcgatggccgtactggtaatccgttt
gagcgtcctgtaactgttggttacatgtacatgctgaaactgaaccacttggttgacgat
aagatgcacgcccgttctaccggttcttacagccttgttactcagcaaccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtgtgggcgcttgaagcatat
ggcgcagcatatactctacaagagatgttaactgttaagtcggatgacgttaacggccgt
actaagatgtataagaacatcgttgacggcgatcatcgtatggaaccaggtatgccggaa
tcattcaacgtattgttgaaagaaatccgctcgttgggtattaacatcgagctggaagac
gaataa
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integrated database retrieval system
