Prevotella dentalis: Prede_0214
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Entry
Prede_0214 CDS
T02403
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pdt
Prevotella dentalis
Pathway
pdt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Prede_0214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdt03021
]
Prede_0214
03400 DNA repair and recombination proteins [BR:
pdt03400
]
Prede_0214
Enzymes [BR:
pdt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Prede_0214
Transcription machinery [BR:
pdt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Prede_0214
DNA repair and recombination proteins [BR:
pdt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Prede_0214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AGB27597
UniProt:
F9D144
LinkDB
All DBs
Position
1:279091..282900
Genome browser
AA seq
1269 aa
AA seq
DB search
MSNIINNRENFASVQNPYPYPDFLDVQLKSFKDFLQLDTPPEERKNDGLYKVFAENFPIT
DTRNNFVLEFLDYYIDPPRYTIDECLERGLTYSVPLKAKMKLYCTDPEHEDFGTFIQDVF
LGTIPYMTDNGTFIINGAERVVVAQLHRSPGVFFGQGVHANGTVLYSARIIPFKGSWIEF
ATDINNVMYAYIDRKKKLPVTTLLRAIGYESDKEILQIFDLAEEIKVNKKNRKELVGRKL
AARVLKSWNEDFVDEDTGEVVTVERNEVILERETEINEENFEEILGSGTSTVLVHKDAEA
ASKFDIIFETLKKDTSNSEREAVNYIYRQLRNADPADDASAREVFQNLFFSDKRYDLGEV
GRYRINRKLGENIDMDTRVLTKEDIIEIIKYLIKLINSNATVDDIDHLSNRRVRTVGEQL
ANQFSIGLARMSRTIRERMNVRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTNP
LAEVTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYAT
INELGFIETPYRKVADSTVDLNNDDVVYLTAEEEEGKLIAQGNAPLNSDGTFIRSFVHCR
FAADFPVVNPDEVNLMDVSPQQIASVSASLIPFLEHDDGHRALMGCNMMRQAVPLLHNDA
PIVGTGLEKQVCEDSRTMITAEGEGVIEYVDATTIRILYDRTEEDEFVSFEPALKEYRIP
KFRRTNQNMTIDLRPICSKGQRVKKGDILTEGYATENGELALGRNLLVAYMPWKGYNYED
AVVISERMVREDVLTSVHVDEYSLDVRETKRGVEVFTSDIPNVSEEATKDLDDNGIIRVG
ARVEPGDIMIGKISPKGESDPSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLF
ARAEKTRESKRQDKVLLQKIDEEYEAKGDELKNMLVDKLLTLTEDKTCQGVKDYTDAEII
TKGSKFTVAALKNLEYDGIQSNGWTDDDHTNGMIQKLIMNYIHKAKQQAAELNRRKFAIT
IGDELPSGVLKMAKVYIAKKRKIQVGDKLAGRHGNKGIVSKIVRAEDMPFLEDGRPVDLV
LNPMGVPSRMNLGQIFEAILGAAGRRLGKKFATPIFDGAKLDDLKEWTTKAGLPNLCSTY
IYDGETGERFDQPATVGVTYFLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEGFGASHVLQEMLTLKSDDVTGRSKAYESIVKGDPMPTPGIPESLNVLLHELR
GLGLSVKLD
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacattattaataacagagaaaactttgccagcgttcagaatccgtatccctac
ccggattttttggatgttcagctgaagtcgttcaaagatttcctgcagttagatactccg
cctgaggaacgcaagaatgacggtctgtataaggtgttcgcagagaacttccctatcacc
gacacgcgtaataattttgttcttgagttcttggattactatattgatccgccgcgctac
actatcgacgagtgtttggagcgcggactgacgtacagcgtacccttgaaggccaagatg
aaactttactgcacggatccagagcatgaggatttcggcacgttcattcaggatgttttc
ttgggaacgattccgtacatgacggacaacggcacctttatcatcaatggtgccgagcgt
gtcgttgtggcccagctccatcgctcgccgggtgttttcttcggccaaggcgttcatgcc
aacggtaccgtgctctacagtgcgcgcattattccgttcaagggttcctggatagagttt
gccactgatattaataatgtgatgtatgcttacatcgatcgcaagaagaagttgccggtt
acaacacttcttcgtgccatcggttatgagagcgacaaggaaattcttcagattttcgat
cttgcagaggaaattaaggtcaacaagaaaaaccgtaaggaacttgtcggccgcaaactt
gctgcacgcgtgctgaaaagctggaatgaagatttcgtagacgaggacacgggtgaggtg
gtgactgttgagcgcaatgaggtgattcttgagcgtgagacggaaatcaatgaggagaat
ttcgaggaaatccttgggagtggaacctctaccgtgcttgtgcacaaggatgccgaggct
gccagcaaattcgatattatcttcgagactctgaagaaagataccagcaactccgagcgt
gaggcagtgaactacatctatcgccaactgcgcaatgccgacccggcagatgatgccagc
gcacgcgaggtgttccagaacctgtttttctcggacaagcgctacgacctcggtgaggtt
ggacgttatcgcatcaacaggaagttgggcgagaacatcgacatggacacgcgcgtgctg
accaaggaggatattattgagattatcaagtatctcatcaagctcatcaactccaatgca
acggttgatgatattgaccacctgtccaaccgccgtgtccgcacggtgggcgagcagttg
gccaaccagttctcaatcggacttgcccgaatgagccgcaccattcgcgagcgtatgaac
gtgcgcgacaatgaggtgttcaccccgaccgacctcatcaatgccaagaccatctccagt
gttatcaactcattcttcggaaccaacccgctgagtcagttcatggatcagaccaacccg
ctggcagaggtgacacacaagcgtcgtctttccgccttgggccccggtggtctgtctcgt
gagcgtgccggcttcgaggtgcgtgatgtgcactacacccattacggccgtctgtgtccc
atcgagtcgcccgaaggcccgaacatcggcttgatttcctcgctctgtgtgtatgccacc
atcaacgaacttggcttcatcgagaccccataccgcaaagtcgccgattccacggttgat
ttgaacaatgacgacgtggtctatctcacggccgaggaagaggagggcaagttgattgca
cagggcaatgcaccgctgaattccgacggtactttcatccgtagtttcgtgcattgccgt
tttgcagccgacttccctgtggtgaatccggatgaggtgaatctcatggacgtgtcgccc
cagcagattgcttctgtcagtgccagcttgattccgttcctggagcatgacgacggtcac
cgagccttgatgggatgcaacatgatgcgtcaggctgtgcctttgttgcacaatgacgcc
cccattgtgggtaccggactggagaaacaagtctgcgaagacagccgcacgatgattacg
gccgagggcgaaggtgtcatcgaatacgtggacgccacaaccatccgtatcttgtacgac
cgtaccgaggaagatgaattcgtcagcttcgagccggccttgaaagaataccgcataccg
aaattccgtcgcaccaaccagaacatgaccatcgacctgcgtccgatttgcagcaaaggc
cagcgtgtgaagaagggcgacattctcaccgagggctatgccaccgagaacggcgagctt
gccttgggccgcaacctgctcgtggcctacatgccgtggaagggctacaactatgaggat
gccgtggttatctcagagcgcatggtacgtgaggacgtgcttacctccgtgcatgtggac
gagtattcgctcgacgtgcgcgagaccaagcgcggcgtggaagtgttcaccagcgacatt
cccaatgtgagcgaggaagccaccaaggaccttgacgacaacggtatcatccgtgtggga
gcccgtgtcgaaccgggcgacatcatgattggcaagatttcgcccaagggcgagagcgac
ccctcgcccgaggagaagttgctccgcgccatcttcggcgacaaggccggcgacgtgaag
gattcttcactcaaggccaacccgtcactgagcggtgtcgttatcgacaagaaactcttt
gcacgtgccgagaagacccgcgagtcgaagcgtcaggacaaggtgttgcttcagaagatc
gacgaggagtatgaggccaagggcgacgagctgaagaacatgcttgtggacaagctgctc
accctgaccgaagacaagacttgccagggcgtcaaggactacaccgatgccgagattatc
accaagggcagcaaattcacggtggctgcactcaagaacttggagtacgacggcatccaa
agcaacggatggaccgacgacgaccacaccaacggcatgatacagaagctcatcatgaac
tatatccacaaggccaagcagcaggctgccgagctgaaccgtcgcaagtttgcaatcacc
atcggcgacgagctgccctccggcgtgctcaagatggccaaggtgtacattgccaagaag
cgcaagattcaggtgggcgacaagctcgccggtcgccatggcaacaagggcattgtgtcc
aagattgtacgtgcggaggacatgccgttcctggaggatggccgtcccgtagacttggtg
cttaaccccatgggcgtgccttcgcgtatgaatctcgggcagatcttcgaggctattctt
ggcgccgccggccgtaggctcggcaagaagtttgccactccgattttcgatggtgccaag
ctcgacgacctgaaagaatggaccaccaaggcaggcctgcccaatctctgttccacctat
atctacgatggtgagacgggcgagcgtttcgaccagccggccacggtgggtgtcacctac
ttcctgaagctcggccacatggtggaggacaagatgcacgcgcgttccatcggcccgtac
tcgctcatcacgcagcagccgctcggcggtaaggcgcagttcggcggccagcgtttcgga
gagatggaggtctgggcccttgaaggcttcggtgccagccatgtgctgcaggagatgctc
accctcaagagtgatgacgtgaccggccgttccaaggcctacgagtccatcgtgaagggc
gaccccatgcccactcccggcatccccgaatctctcaatgtgcttctccatgagctccgc
ggccttggactgagcgtgaagttggattaa
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