Paenibacillus durus: PDUR_16160
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Entry
PDUR_16160 CDS
T03297
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pdu
Paenibacillus durus
Pathway
pdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDUR_16160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdu03019
]
PDUR_16160
Messenger RNA biogenesis [BR:
pdu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PDUR_16160
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_KhpA-B
KH_PNO1_2nd
HDOD
KH_NusA_2nd
DUF4083
KH_2
Innexin
Motif
Other DBs
NCBI-ProteinID:
AIQ13271
UniProt:
A0A089HMR8
LinkDB
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Position
complement(3668431..3669972)
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AA seq
513 aa
AA seq
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MDTWIWVIIVLVVATLFFGFGYFIRKSLAEAKISSAEQAASVIVENAKKEAEALKKETVL
EAKDEVHRIRTEAEKETRERRNEIQRQERRLLQKEESLDKKMESLERKEEQVANKEKRID
ETQQQIDVIYRNQVAELERISNLSMEDARSIILSNVEQEVRHETAQMIKDIEQQAKEEAD
KKSREIITLAIQRCAADHVAETTVSVVTLPNEEMKGRIIGREGRNIRALETLTGIDLIID
DTPEAVILSGFDPIRREVARTALEKLVADGRIHPARIEEMVEKSRKEVDERIREYGEQAT
FEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAYLTGLMAGELGEDIVLAKRAGLL
HDIGKALDHEVEGSHVEIGVELAKKYKEHPVVINSIASHHGDAEATSVIAMLVGAADALS
AARPGARRETLETYIKRLEKLEEISESFEGVEKSYAIQAGREVRVMVQPDKIDDAEAFRL
ARDITKTIENELDYPGHIKVTVIRETRAVEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggacacctggatctgggtcatcatcgttctcgttgtagcgacattattctttgggttc
ggttattttattcggaaatcccttgcagaagctaagatttccagcgcggaacaggctgct
agcgtaatcgtggagaacgcgaagaaggaagcggaggcgctgaagaaggaaacggtattg
gaagccaaggacgaagtccacagaatccgtaccgaggctgagaaggaaactcgcgaacgt
cggaatgaaatccaacgtcaggaaagacggttgctgcaaaaggaagaatcgctggataaa
aaaatggaatcgcttgaacgaaaagaagaacaagtggctaacaaagagaaacgaattgac
gaaacccagcagcaaatcgatgtaatttacagaaatcaggttgctgaattggagcgtatc
tccaatttgagcatggaagacgcaagaagtattatcctttccaatgtagaacaggaagtt
cggcatgaaaccgcgcagatgatcaaggatattgaacagcaggccaaggaagaagcggac
aagaagtcccgcgagatcattaccctagctattcaacgctgcgccgccgatcatgtagcg
gaaacaacggtatccgtcgttacacttccgaatgaagagatgaagggacggataatcggc
cgcgaaggccggaatatccgcgctctggaaaccctcaccggtattgaccttattatcgac
gacacgccagaagcggttattttgtcaggatttgatccgattcgccgggaagtggcccgt
acggcactggaaaagctggtggcagacggacgtatccatccggcgcgtatcgaagaaatg
gtcgagaaatcgcgtaaggaagtggatgaacggattcgggaatatggcgagcaagccacc
ttcgaggttggcgttcatggtctgcacccggatttgatcaaaattctcggtcgactgaaa
ttccgtacgagctatggtcagaacgtattgaagcactccatggaggttgcttatttgacc
gggctgatggccggtgagcttggggaagacatcgtgctagccaaacgcgcgggactgctt
catgatatcggcaaagcgctggatcatgaggtggaaggctcacacgtcgagatcggcgta
gagcttgctaagaaatataaagaacatcctgttgtcattaatagcattgcttcccatcac
ggggacgcagaagcgacttcggttatcgctatgctggttggtgcggctgacgcattgtcg
gcggcaagaccgggagcgcgccgggaaacgctggaaacgtatatcaagcgtctggagaag
ctggaggagatttccgaatctttcgaaggcgtcgagaagtcatatgcgattcaagccggc
cgtgaggtccgcgtaatggtgcagcctgacaagatcgacgatgccgaagctttccgtctg
gcgcgcgatattacgaagacgattgaaaatgaactggactacccgggtcatatcaaggtc
actgttattcgcgagacacgggcggttgagtacgctaaatag
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