Prunus dulcis (almond): 117620906
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Entry
117620906 CDS
T07328
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117620906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117620906
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117620906
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
117620906
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
117620906
NCBI-ProteinID:
XP_034207045
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All DBs
Position
3:18133325..18135920
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AA seq
287 aa
AA seq
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MVGLSIGEKHFIQGGIAQDLRSDGRKRLTTRPIYVETGVISQANGSARVRMGATDVIASV
KAELGRPNALQPDKGKVVVNVDCSPTAAPMFEGRGGEELSAELSVALQCCLLGGKSGSGA
GIDLSSLVVVEGKICWDLYVDGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVAAGASGD
EQPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISINRQGHIC
GLTKRGGAGLDPSIILDMISVAKTVSEQLINTLDSHIAAAEAGEEES
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggtgggactatccataggagaaaagcattttatacagggtggcattgctcaggatctt
cgttctgatggccgaaaaagattgacgactcgacccatctatgttgaaactggagtcatt
tctcaggcaaatggttcggcaagggtcaggatgggtgccacagatgtcattgccagtgtg
aaggctgaacttggaaggccgaatgcgttgcaacctgacaaaggaaaggtcgttgtaaat
gttgattgcagtcccactgctgcaccaatgtttgagggtagagggggtgaggagctgtca
gcagaactctcagttgctcttcaatgttgtctcttgggtggtaaaagtggatctggtgct
ggaattgatctctcctctctggtagttgtggaaggaaagatctgttgggatctttacgtc
gacggccttgttgttagttcagatgggaatctgctagatgccctaggtgctgctataaag
gctgctttaagtaatacaggtatcccaaaagtaaatgttgcagccggtgcatcaggcgat
gagcaaccagaggttgacgtaagcgatgaggaatttctgcaatttgacacatctagggtc
cctgtcatagttacattaacaaaggtaggtcggcactatattgtagatgccacttcagaa
gaggaatcacaaatgagctcggctgtttctatttccatcaataggcaaggccacatttgt
gggttgaccaaacggggcggtgccggcctagatccaagcatcattcttgacatgatatct
gtggcaaaaacagtaagtgagcagctgataaacactttggattctcacatagctgctgct
gaagctggcgaagaggagtcgtga
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