Prunus dulcis (almond): 117632708
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Entry
117632708 CDS
T07328
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117632708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117632708
Enzymes [BR:
pdul01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
117632708
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
117632708
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
117632708
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
117632708
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
117632708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
Macro
HIT
AAA_18
Zeta_toxin
AAA
AAA_22
POT1
AAA_16
CPT
AAA_17
MeaB
Viral_helicase1
nSTAND3
ATP_bind_1
NTPase_1
NACHT
AAA_28
Motif
Other DBs
NCBI-GeneID:
117632708
NCBI-ProteinID:
XP_034222151
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All DBs
Position
6:complement(25044031..25047434)
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AA seq
812 aa
AA seq
DB search
MGTSLPPKCHKHISNAFLKNQPPVIEASGRRRDRWFQAVDSKSGRVSLNMDMDIDETAKE
FMCLTGEEKHGKPIVVILMGAPGSGKSTFCERVMDSSTRPWVRVCQDTIKSGKAGTKAQC
IESAINALKDGKSLFIDRCNLEIEQRNEFVKLGGPQVDVHAVVLDLPAKLCISRTVKRTG
HEGNLQGGRAAAVVNRMLQKKELPKLSEGFARITSCQNESDVQSTIDAYSGLGPLDTLPS
GYFGQKNPGAKIQLGIMKFLKKTDAPASSESISKSIPDSNASQISEEKDACLKGTGSLSE
NAGRELKEGEEPVVGSAGGDVSLKDAPTLAFPSISTADFQFDLEKASDIIVEKVAKFVNK
LGNARLVLVDLSHKSKILSLVRTKASEKNIDSNKFFTFVGDITRLHSEGGLHCNVIANAA
NWRLKPGGGGVNAAIFSAGGQALEVATKEQAKSLLPGNSVVVPLPSTSPLFCREGVTHVI
HVVGPNMNPQRPNCLNNDYIKGCKVLQEAYTSLFEGFSSIVRSQSKLPKGSIENLQSDMT
ESRDHTDCIPKDHFTNSDQKNKREGLHKSERSKRSKGYRDETEDASDSNVGKVNLSNKSD
GSRTKSWGSWAQALYNIAMQPEKHRDAVLEISDDVVVLNDLYPKAQRHVLVVARYEGLDC
LADVRKEHLQLLRTMHAVGLNWAEKFLHDDSSLVFRLGYHSEPSMRQLHLHVISQDFDST
HLKNKKHWNSFNTAFFRDSVDVMEEVSSNGKAILKDEDRMLSMELRCHRCRSAHPNIPRL
KSHVTNCRASFPSTLLQKGRLVLTPCNVSIDA
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgggcacctctctcccccccaagtgtcacaagcacatttccaacgcatttctcaaaaac
caaccaccggtaatagaagcttccggtagaagaagagaccgttggtttcaagccgttgat
tcgaagagtggcagagtctcactgaacatggacatggatattgacgaaacagccaaggaa
ttcatgtgtttaacaggcgaagaaaaacacgggaagccaatcgtggtaatattgatgggc
gcgcctggaagcggcaagtccaccttctgtgaacgtgtcatggactcctctacccgtccc
tgggttcgcgtctgtcaggacactatcaaaagtggtaaagctggaaccaaagctcagtgt
atagagagtgcaattaatgcattgaaggatgggaagagtttgtttatagatagatgcaat
ctagagatagaacaacgcaatgagtttgttaagcttggtggtccccaggttgatgttcat
gctgtggtgcttgatcttcctgccaagctttgtatatcgcggactgtgaagcgaacgggc
catgaaggaaacttgcaaggtgggagagctgctgcggttgtgaatagaatgctgcaaaag
aaagaactgcctaaactgagtgaagggtttgctagaatcacttcttgccagaatgagagt
gatgttcaatctaccatcgatgcatatagtggacttggtcctttggatacacttcccagt
ggttattttggccagaagaatcccggtgccaaaattcaactcggcataatgaagttctta
aagaaaacagatgctcctgctagttctgaatcaatttcgaaaagtattccggattctaat
gcttctcaaattagtgaagagaaggatgcctgtttgaaaggaacaggttcattatctgag
aatgctggtagggagttaaaagaaggtgaagagccagttgtaggctcagctggcggcgat
gtttctcttaaggatgctcctactctggcatttccctctatatcaacagcagactttcaa
tttgaccttgagaaggcatctgacattattgttgagaaagtcgcaaagtttgtgaataag
cttggaaatgctagacttgttttagtggacttgagtcataaatcaaagattttgtctttg
gtaaggactaaagcttcagagaagaacattgattccaacaagttcttcacatttgtagga
gatatcactcggcttcattcagaagggggtttacactgcaacgtaatagctaatgctgct
aattggcgactcaaacctggaggtggaggtgtcaatgctgcaatcttcagtgctggaggt
caagctttggaggttgcaaccaaagaacaggccaaatctctgcttcctgggaattctgtg
gttgtgcctctcccttcaacttctccactgttttgtagggaaggggtaacccatgtcata
catgttgttggacccaacatgaacccacagagaccaaattgtctgaacaatgactacatc
aaaggttgcaaagttctccaggaggcttacacttcactttttgaaggtttttcatcaatt
gtaaggtcccaatcgaagttacccaagggaagcattgaaaaccttcagtcagatatgaca
gagtcacgagatcacactgactgtatccctaaagatcattttactaacagtgatcaaaag
aataagagagagggtcttcataaatctgagaggagcaaacgaagtaaaggatatcgggat
gaaactgaagatgcctctgattctaatgttggtaaagtaaacctgagcaacaagtctgat
ggaagcaggactaaatcctggggttcatgggctcaggctctctacaacattgctatgcag
ccagagaagcacagggatgctgtactagagatatccgatgatgttgttgtactgaatgat
ctttatccaaaggcacaaaggcatgttctggtggtggcacgatatgaaggtcttgattgc
ctggcagatgtacgtaaagaacaccttcagttgttaaggacaatgcatgctgttggtttg
aactgggctgagaagttcttgcatgatgattcatcattggtctttcggcttggatatcac
tcggaaccgtcaatgcgacagctgcacctgcatgttattagccaggattttgattcaaca
catttgaagaataagaaacattggaactcctttaatactgctttctttcgagactctgtg
gatgtaatggaggaagtcagtagtaatggaaaagcaatactaaaagatgaggaccgcatg
ttgtccatggagttgcgatgtcaccggtgtagaagtgctcaccccaacataccccgatta
aaatcacacgttacaaactgtcgagcctcttttccaagcaccctgctccaaaagggtcgt
ctagtgctcacgccatgcaatgtcagcattgatgcgtaa
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