Prunus dulcis (almond): 32882938
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Entry
32882938 CDS
T07328
Symbol
rpoB, CCN91_pgp075
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
32882938 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdul03021
]
32882938 (rpoB)
03400 DNA repair and recombination proteins [BR:
pdul03400
]
32882938 (rpoB)
Enzymes [BR:
pdul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
32882938 (rpoB)
Transcription machinery [BR:
pdul03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
32882938 (rpoB)
DNA repair and recombination proteins [BR:
pdul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
32882938 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
32882938
NCBI-ProteinID:
YP_009366334
LinkDB
All DBs
Position
Pltd:complement(24026..27238)
Genome browser
AA seq
1070 aa
AA seq
DB search
MLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLV
EPVIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYR
ILINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKQKISI
LVLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVVS
ESLCKELQKKFFQQRCELGRVGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGM
GTLDDMNHLKNKRIRSVADLLQDQLGLALVRLENMVRGTICGAIKHKLIPTPQNLVTSTP
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLAIHAKIGYWGSLESPFYEISERSKKVRMLYLSPSKDEYYMVA
AGNSLALNRGIQEEQVVPTRYRQEFLTVEWEQVHLRSIFPFQYFSIGASLIPFIEHNDAN
RALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEHEGKVIYTYTDKIVLSGN
GDTLNIPLVIYQRSNKNTCMHQNPQVRRGKCIKKGQILADGAATVGGELALGKNVLVAYM
PWEGYNSEDAVLISERLVYGDIYTSFHIRKYEIQTHVTSNGPERITNEIPHLEAHLLRNL
DKNGIVRLGSWVKTGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG
GRGRVIDVRWIQKKGGSSYNPETIRVYISQKREIKVGDKVAGRHGNKGIVSKILPRQDMP
YLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLV
FSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKIHG
RSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVL
GTTIIGGTIPKPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgcttgggggtggaaatgaggcaatatctacaatacctggatttaatcagatacagttt
gaagggttttgtaggttcattgagcagggcttaacagaggaactttataagtttccaaaa
attgaagatacagatcaagaaattgaatttcaattatttgtggaaacatatcaattggta
gaaccagtgataaaagaaagagatgctgtatatgaatcactcacatattcttcggaatta
tatgtatccgcgggattaatttggaaaaacagtagggatatgcaagaacaaacaattttt
attggaaacattcctttaatgaattccctgggaacttctatagtaaatggaatatacaga
attttaatcaatcaaatattgcaaagccccggtatctattaccggtcagaattggaccat
aacggaatttccgtctataccggcatcataatatcagattggggaggaagattggaatta
gagattgatagaaaagccaggatatgggctcgtgtgagtaggaaacaaaaaatatctatt
ctagttctatcatcagctatgggttcaaatctaagagaaattctagagaatgtttgctac
cctgagattttcttgtctttcctgaatgataaagagaaaaaaaaaattgggtcaaaagaa
aacgccattttggagttttatcaacaatttgcttgtgtaggcggggatccggtagtttct
gaatccttatgtaaggaattacaaaagaaattctttcaacaaagatgtgaattaggaagg
gttggtcgacgaaatatgaaccgaagactaaatcttgatatacctcagaacaatacattt
ttgttaccgcgagatatattggcagctgcggatcatttgattggaatgaaatttggaatg
ggtacacttgatgatatgaatcatttgaaaaataaacgtattcgttctgtagcggatctc
ttacaagatcaattaggattggctctggttcgtttagaaaatatggttagagggactata
tgcggagcaattaagcataaattgataccgactcctcagaatttggtaacttcaactcca
ttaacaaccacttatgaatcttttttcggattacacccattatctcaagttttggatcga
acaaatccattgacacaaatagttcatgggagaaaatcgagttatctgggccctggagga
ttgacagggcgaactgctagttttcggatacgagatatccaccctagtcactacgggcgc
atttgccccattgacacgtctgaaggaatcaacgttggacttattggatccttagcaatt
catgcgaagattggttattgggggtctctagaaagtccgttttatgaaatttctgagaga
tcaaaaaaggtaaggatgctttatttatcaccaagtaaagatgaatactatatggtagcg
gcaggaaattctttggcgttgaatcgaggtattcaggaagaacaggttgttccaactcga
taccgtcaagaattcctgactgttgaatgggaacaggtccatcttcgaagtatttttccc
ttccaatatttttctattggagcttccctaattccttttatcgagcataatgatgcgaat
cgggctttaatgagttctaatatgcaacgtcaagcagttccgctttctcggtctgaaaag
tgcattgttggaactgggttggaacgccaagtggctttagattccggggttcctgctata
gccgaacatgagggaaaggtcatttatacctatactgacaagatcgttttatcgggaaat
ggagatactctaaacattccattagttatatatcaacgttccaacaaaaatacttgtatg
caccaaaacccccaggttcggcgaggtaaatgtattaaaaagggacaaatcttagcggat
ggtgctgctacggttggcggcgaactcgctttgggaaaaaacgtattagtagcttatatg
ccatgggagggttacaattctgaagatgcggtactcattagtgagcgtctggtatatgga
gatatttatacttcttttcatatacggaaatatgaaattcaaactcatgtgacaagcaac
ggccctgaaagaatcactaacgaaataccgcatctagaagcccatttactccgcaattta
gacaaaaatggaattgtgaggctggggtcttgggtaaagacgggcgatattttagtaggt
aaattaacacctcagatggcgaaagaatcgtcgtatgctccggaagatagattattacga
gccatacttggcattcaggtatccacttcaaaggaaacttgtctaaaattacctataggt
ggtagaggtcgagttattgatgtgagatggatccagaaaaaaggaggttctagttataat
ccagaaacgattcgtgtatatatttcacaaaaacgtgaaatcaaagtaggtgataaagta
gctggaagacatggaaataagggtattgtttcaaaaattttacctagacaagatatgcct
tatttgcaagatggaagacctgttgatatggtcttcaacccattaggagtgccctcacga
atgaatgtaggacagatatttgaatgctcgctcgggttagcggggggtctgctagataga
cattatcgaatagcaccttttgatgagagatatgaacaagaggcttcgagaaaactagtg
ttttctgaattatatgaagccagtaagcaaacagctaatccatgggtatttgaacctgag
tatccgggaaaaagcagaatatttgatggaagaacgggagatccttttgaacaacctgtt
ataataggaaagccttatatcttgaaattaattcatcaagttgatgataaaatacatgga
cgttccagtggacattatgcacttgttacacaacaaccccttagaggaagggccaagcaa
gggggacaacgggtaggagaaatggaagtttgggctctagagggatttggtgttgctcat
attttacaagagatgcttacttataaatctgatcatattagagctcgccaagaagtactt
ggtactacaatcattggaggaacaatacctaaacccgaggatgctccagaatcttttcga
ttgctcgttcgagaactacgatctttggctctggaactgaaccatttccttgtatctgag
aagaacttccagattaataggaaggaagcttaa
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