Pseudonocardia dioxanivorans: Psed_4989
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Entry
Psed_4989 CDS
T01479
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pdx
Pseudonocardia dioxanivorans
Pathway
pdx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Psed_4989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdx03400
]
Psed_4989
Enzymes [BR:
pdx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Psed_4989
DNA repair and recombination proteins [BR:
pdx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Psed_4989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEA27127
UniProt:
F4CNA3
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All DBs
Position
complement(5342976..5345027)
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AA seq
683 aa
AA seq
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MPARRPDAALRPMLATPGRPPSGPGWAVEFKWDGVRALLDVDDAGEVHLTSRNGNDVTLG
YPDLLAGVDTGQPLVLDGEIVALDEAGRPDFGLLQNRMHVRHPSGPLLAEVPVRFYAFDV
LRVGQRSLLRETYDDRRAALAGLGVDGWARFAVPPSTTEVPPAQMLDVAREHGLEGIVAK
RRTSRYEPGRRAASWVKTALFTTREVVLGGWTPGQGRRGALGSLLLGAYDDEGRLHYLGN
VGSGFSEAALRSLREKLEQLRSDEDPFASGVPREHARGVRWVQPRLVGEVEYRTLTHDAR
LRHSVWRGLRPDRDPHEVRIDGAFARAPLASYGVRAPAPEPARAPAASEPAEAASARAEA
PAERVRAATGDELAALDALRRKGTWHVAGEEVALTNLDKVLFPGRDGGPPVTKRDFVRYH
ARVAPYLLPYLQGRPVNMQRFPDGVAREGFWQKEIPVHAPDWVTRWRYPDAEPGDVQDYV
VVDSTATLVWLANLAAVELHPWTSRLPDVHRPTWALIDIDPGPRTAFDEVLAVARLYRAA
LDHLGVAAAPKVTGKRGVQIWVPVTPGPTFADTRGWVEKVSRAVGRMVPELISWEWHTDR
RAGRMRLDYTQNVINKTLVAPFSARPAAGAPVSMTLSWDELDDPELRPDRWTVGTALDRL
DAVGDPMFPLVGREQVLPELGGV
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcccgccggcccgacgccgccctgcggccgatgctggccacccccggccgcccg
ccgtccggtcccgggtgggcggtggagttcaagtgggacggcgtgcgcgccctgctcgac
gtcgacgacgcgggcgaggtgcacctgaccagccgcaacggcaacgacgtcacgctgggc
taccccgatctgctggccggcgtcgacaccgggcagcccctggtgctcgacggcgagatc
gtcgcgctcgacgaggcgggccgtcccgacttcgggctgctgcagaaccgcatgcacgtc
cggcacccgtccgggccgctgctcgccgaggtcccggtgcgcttctacgcgttcgacgtg
ctgcgcgtcggtcagcgctcgctgctgcgcgagacctacgacgaccggcgcgcggcactc
gccggcctcggtgtcgacggctgggcccgcttcgcggtgccgccgtcgacgaccgaggtg
ccgcccgcgcagatgctcgacgtcgcgcgcgagcacggcctggaggggatcgtcgccaag
aggcggacgtcgcgctacgagcccgggcggcgggcggcatcgtgggtgaagacggcgctg
ttcaccacgcgggaggtcgtcctcggcggctggacgccagggcagggccgccgcggcgcg
ctcggctcgttgctgctcggcgcctacgacgacgagggccggctccactacctgggcaac
gtgggcagcgggttcagcgaggccgcgctgcggtcgctgcgggagaagctcgaacagctg
cgcagcgacgaggatcccttcgcctccggcgtgccgcgcgaacacgcccgtggtgtgcgg
tgggtgcagccgcggctggtcggggaggtcgagtaccgcacgctcacccacgacgcccgg
ctgcggcactcggtgtggcgggggctgcgtcccgaccgcgacccgcacgaggtgcgtatc
gacggcgcgttcgcgcgggcaccgctggcgtcctacggcgtgcgcgcgccggcccccgag
cccgcgcgggcgcccgcagcgtcggagccagcggaagcagcgtcggcgagagcggaggcg
ccggccgagcgggtccgggccgccaccggcgacgagctcgccgccctcgacgccctgcgc
cgcaagggcacctggcacgtcgcgggcgaggaggtcgcgctgacgaacctcgacaaggtg
ctgttccccggccgcgacggcgggccgcccgtcacgaagcgggacttcgtgcgctaccac
gcgcgcgtcgcgccgtacctgctgccgtacctgcaggggcggccggtgaacatgcagcgc
ttccccgacggcgtggcgcgggagggcttctggcagaaggagatcccggtccacgcgccg
gactgggtgacgcgctggcgctaccccgacgccgaacccggcgacgtgcaggactacgtc
gtcgtcgacagcaccgcgacgctcgtgtggctggccaacctcgccgcggtcgagctgcac
ccctggacctcgcggctgcccgacgtccaccggcccacctgggcgttgatcgacatcgac
ccgggtccgcgcacggcgttcgacgaggtgctcgccgtcgcgaggctctaccgcgccgcg
ctcgaccacctgggcgtcgccgcggcgcccaaggtcaccggcaagcggggggtccagatc
tgggtcccggtgacgcccggtccgacgttcgccgacacccgcgggtgggtcgagaaggtg
tcgcgggccgtggggcgcatggtccccgagctgatctcctgggagtggcacaccgaccgc
cgggcggggcggatgcgcctggactacacgcagaacgtcatcaacaagacgctcgtcgcg
ccgttcagcgcccggcccgcggccggcgccccggtgtcgatgacgttgagctgggacgag
ctcgacgaccccgagctgcggcccgaccgctggacggtcgggaccgcgctcgaccggctc
gacgccgtcggcgacccgatgttcccgctggtcggacgcgagcaggtcctgccggagcta
gggggcgtctga
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