Pseudoalteromonas espejiana: PESP_a0296
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Entry
PESP_a0296 CDS
T04989
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pea
Pseudoalteromonas espejiana
Pathway
pea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PESP_a0296 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pea03021
]
PESP_a0296 (rpoB)
03400 DNA repair and recombination proteins [BR:
pea03400
]
PESP_a0296 (rpoB)
Enzymes [BR:
pea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PESP_a0296 (rpoB)
Transcription machinery [BR:
pea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PESP_a0296 (rpoB)
DNA repair and recombination proteins [BR:
pea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PESP_a0296 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ASM48561
LinkDB
All DBs
Position
I:282979..287004
Genome browser
AA seq
1341 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLESFKKFLVPDADGDHGLEAAFRSVFPIK
SYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVVMDKEAPGTVKDIKEQE
VYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKTHSSGKVLYNARVIPYRG
SWLDFEFDAKDNLYVRIDRRRKLPASIILRALEYSSEQILDMFFENTAFEVTDGKVLMEL
VPSRLRGETAAFDIKGEDGEVLVEAGRRITARHIKSIEKKGISQLEVPHEYIIGRVVAKN
YVDESTGEVIANANDELSLELMAELVKAGHTKIDTLYINEVDSGAYMSNTLNIDSSSNRL
EALVEIYRMMRPGEPPTKDAAEALFENLFFSEERYDLSTVGRMKFNSRVGYDTDTGPGTL
SKEDIVSVMKVLIAIRNGQGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPYRKVVDGVVT
DEVDYLSAIEEGQFVIAQANSNLTETNEFVDELIPCRHKGESTFMGRMDQQYMDVSPQQV
ISVAAALIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGIELTLAKDSGVTIVAKR
GGEVMYADASRIVVNVHDDERIPGEAGIDIYNLTKYTRSNQNTCINQKPTCMVGEPVTRG
DVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVEEDRLTTIHIQELQCVA
RDTKLGPEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEVEDMQLREAKKDF
NEEFRILEAGVLDRARKLLVAAGFDEDNLTSLNAEKLLTQSLAQEDKQAELEQLAAQYDE
LKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMGLAARGIGERLEEMMKEQRELHE
LREFIKQAYEIGESRQEVDIASFSDDEIRRLADNLKGGLPIATPAFDGAKEDEIKDMLEL
GGYPRSGQVTLYDGRTGDQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPE
SFNVLLKEIRSLGINIELEEN
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcttattctgaaaagaaacgtatccgtaaggattttggtaaacgtccacaa
gttttggatatacctttcttactgtcgacgcagttagaatcgtttaaaaaattcttagtc
ccagacgctgatggcgatcatggtttggaagctgccttccgttctgtgttccctattaaa
agctactcgggaaattctgagcttcaatacgtaagttatcgtattggtgagccagtattc
gatgtaaaagaatgtcaaattcgcggtgtgacttattctgctccacttcgcgtgaaactg
cgtcttgtagttatggacaaagaagctccaggcacagttaaagacattaaagagcaagaa
gtttacatgggcgaaattccgctcatgactgataccggtacttttgtaatcaatggtaca
gagcgtgttatcgtttctcagctacaccgtagccctggtgtattctttgataacgaccgc
ggtaaaacccattcatcgggtaaagtgttatataacgctcgcgttataccttaccgtggt
tcatggttagacttcgaatttgatgcaaaagataacttatatgtgcgtattgaccgccgt
cgtaaattaccggcgtctatcattttacgtgcacttgagtactctagcgaacaaatccta
gatatgttcttcgaaaacaccgcgtttgaagtaactgacggtaaagttcttatggaactt
gtgccttcacgtttacgtggtgaaactgccgcttttgatatcaaaggcgaagacggtgaa
gtacttgttgaagcgggtcgtcgtattacggcacgtcacatcaagagcatcgagaaaaaa
ggcattagtcaattagaagtaccacatgagtacatcattggtcgtgttgtagctaaaaac
tatgttgatgagtcaactggtgaagtaattgcaaacgctaatgacgagctatcactagag
ttgatggctgaattggttaaagcaggtcacactaaaattgatacgttatatatcaatgaa
gtggacagcggcgcttacatgtcaaatacattaaatattgactcgtctagcaaccgttta
gaagcattagtagaaatttaccgcatgatgcgcccaggcgagccaccgacgaaagacgcg
gctgaagccttatttgagaacttgttcttctctgaagagcgttatgacttatctactgta
ggtcgtatgaagttcaatagccgtgttggttacgatacagacacaggccctggcacatta
agcaaagaagacatcgtgtctgttatgaaagtattaattgctattcgtaacggtcaaggc
gatgttgatgatattgaccacttaggcaaccgtcgtatacgtagtgttggcgaaatggct
gagaaccaattccgtgttggtctagtacgtgtagagcgtgctgtacgtgagcgtttaagc
ttaggtgaccttgacgcgataatgccacaagatcttattaacgctaagcctatttcggca
gcggttaaagagttcttcggctcgtctcagttatcacagtttatggaccaaaataacccg
ctatcagaagtaacgcataagcgtcgtatttctgcattaggtccgggcggtctaactcgt
gagcgtgcaggctttgaagtacgtgacgttcacgtaactcactacggtcgcgtatgtcca
atcgagactcctgagggtccaaacatcggtctaattaactcgttatctacgtacgcacgt
acaaatgattacggtttcttagaaacaccttaccgtaaagtggtagatggtgtagttact
gatgaagttgattatttatcagccattgaagaaggtcagtttgttatcgcacaagcgaac
tcaaacttaactgaaaccaatgagtttgttgatgaacttattccgtgtcgtcacaaaggt
gaatctacctttatgggtcgcatggaccagcaatatatggatgtatcaccacaacaggtg
atctctgtagcggcagcacttatcccgttcctagaacacgatgatgctaaccgtgcattg
atggggtcaaacatgcaacgtcaagcagtaccaacattgaaagcggataagccgttagta
ggtacaggtattgagttaacactagcgaaagattctggtgtaacgattgttgctaaacgt
ggtggtgaagtaatgtacgccgatgcgagtcgcatcgttgtaaacgtacatgacgatgag
cgtattcctggtgaagcgggcatcgacatttacaaccttactaaatacacacgttctaac
caaaatacatgtattaaccaaaaaccaacttgtatggttggcgaaccggttactcgtggt
gacgtgttagcagatggtccttcgactgacttaggtgacttagcccttggtcaaaacctt
cgcgtggcattcatgccatggaacggttacaacttcgaggattcaatcttactatcagag
cgcgtagttgaagaagatcgtctaacgactatccacattcaagaactacagtgtgttgcc
cgtgatactaaattaggtcctgaagagatcactgcagatatcccgaatgtgggtgagtct
gcactaggcaagcttgatgaatcaggcgttgtttatattggtgctgaagttaaaggcggc
gatatcctagtaggtaaagtgactccgaaaggcgagacgcaattaacacctgaagagaag
ctactgcgtgctatcttcggcgaaaaagcgtctgacgttaaagacagctctttacgtgta
ccaaactctgtaactggtactgtaattgacgtgcaagttttcacccgtgatggtgttgaa
aaagataagcgcgcgttagaagttgaagacatgcagcttcgcgaagcgaagaaagacttc
aacgaagagttccgtattctagaagcgggtgtattagaccgtgcgcgcaagttacttgta
gctgcaggcttcgatgaagacaacttaacgtcactaaatgctgaaaagctacttactcaa
agtcttgcacaagaagataagcaagctgaacttgagcaactagctgcacagtacgatgag
cttaaagctgaatacgataagaagtttgaaaacaaacgtcgtaaaattactcaaggtgat
gacttagcaccaggcgtacttaagattgttaaagtatacctagctgttaaacgtcgtatc
caaccgggtgataaaatggcgggtcgtcacggtaacaaaggtgttatctcgactatcgta
ccagtagaagatatgccatacgatgataaaggtcgtacggtagatatcgtactaaatcca
ctaggtgtaccatcacgaatgaacatcggtcagatccttgaaacacatatgggtctagct
gcacgtggtattggtgagcgcttagaggaaatgatgaaggaacaacgtgagctgcatgag
ctacgtgaattcatcaagcaagcttacgaaatcggtgaatctcgtcaagaagtagatatt
gctagcttctctgatgatgaaattcgtcgtttagctgataacttaaaaggtggtttacca
atcgctactcctgcatttgatggcgctaaagaagacgaaatcaaagacatgctagagctt
ggtggatacccaagaagtggtcaggttacactctatgatggccgtactggcgatcagttt
gaacgtcaagtaaccgttggttacatgtacatgcttaaacttaaccacttggttgacgat
aagatgcacgcacgttctactggttcttacagccttgttactcagcagccgctgggtggt
aaagcacagttcggtggccagcgttttggtgagatggaagtatgggcacttgaagcttac
ggtgctgcttacactctacaagaaatgctaacagtgaaatcggatgacgtgaacggtcgt
actaagatgtataaaaacatcgttgatggtaaccataaaatggaaccaggtatgccagaa
tcgttcaacgtattgttgaaagaaatccgctcactgggtatcaacatcgagttggaagaa
aattaa
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