Primulina eburnea: 140813790
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Entry
140813790 CDS
T11060
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pebu Primulina eburnea
Pathway
pebu03013
Nucleocytoplasmic transport
pebu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140813790
03015 mRNA surveillance pathway
140813790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140813790
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
140813790
mRNA cycle factors
P-body specific factors
140813790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
140813790
NCBI-ProteinID:
XP_073028618
LinkDB
All DBs
Position
15:complement(29229265..29238577)
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AA seq
509 aa
AA seq
DB search
MKGTLDRTKVVVRHLPPTISQSNFIEQIDSRFSGRYRWLSFRPAKSSQKHITYSRASIDF
NKSDDVLEFAEFFNGHVFVNEKGTQYKTIVEYAPSQRVPKNWLKSDGREGTILKDPEYLE
FLDFLAKPTENLPSAEVQLERKEAERVGASKDIPIVTPLMDYVRQKRAARGGSRRTILNG
KPTRRVSGMLSRNAGSGSSRGGSEKRTSTMYVLRDSSKGASSKNKSSSTPVFKHDEQRLL
DKSVNSAAVSGTDPLAVEGGGSGSSEIGKQKILLLKGKEKETSNASGVSSLQQSAASPAN
NSHSPVPLKQNNRRESSDRIIRSVLGKDIRQNQTFSGSQSEHRIRILNQDRDKKPPRPTN
VQTFQKNANGSPEGKVSSHDSQAFHTEKEERRTRNRDRPDRGVWAPIRRSDGLHASDESL
SSSTSQMSQVVDSSEDMKNDVLIMRGGESRHIGSGRGGSYRQGGRRGSAYNIKDADGSLV
EGKFPKRGGSSGHVSHEKQVWVQKSSPGS
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaaggggacgctagatcgaacgaaggtggtggtgcggcatttgccgccgactatttct
cagtccaatttcatcgagcagatcgattcccgcttctctggccgctaccgttggctttca
tttcggccggccaagtcaagccagaagcatataacatattcaagggctagcatcgacttt
aacaaatcagatgatgtgctagagtttgctgagttttttaatggtcatgtttttgtcaat
gagaaagggacccagtataaaacaattgttgagtacgccccttcacagcgtgttccaaag
aattggttaaagagtgatggtcgcgaagggactatattgaaagatcctgaatatttggag
ttcctggattttcttgcgaaacctactgagaatcttcccagtgcagaggtgcaattggag
agaaaggaagcagaacgtgtaggtgcttcaaaggatattcctatagttacccctttaatg
gactatgttcgtcagaaaagagctgctcggggtggatctcggagaaccattttaaatgga
aagccaacaaggagagtcagtggaatgctctccaggaatgcaggctcaggatcttcaaga
ggtggctcagaaaaaagaacgtccaccatgtacgtgttaagggacagctcaaagggcgca
agcagcaagaacaaatcatcttccacaccagtttttaaacatgatgagcaaagactcttg
gacaaatctgtcaattcagctgccgtctccggaactgatccattagcagtggaaggtggc
ggctcaggttcctctgaaattgggaagcagaaaatcttacttctgaaagggaaagaaaag
gaaacctctaatgcttctggtgtttcatcactgcagcagagtgcagcttctcctgccaac
aactcgcacagtccagttcctcttaaacagaacaaccgacgcgaatctagtgacaggatc
atcaggagtgtccttggtaaggatattcggcaaaatcaaacattttctggatcgcaatcc
gaacaccgaattcgcatcttaaatcaggacagagacaagaaacctcctcgtcccacaaat
gtgcagacatttcagaagaatgcaaatgggtctcctgaaggtaaggtatccagccatgat
tcccaagcttttcatactgaaaaagaagaaagacggacaaggaacagggatagacctgat
cgtggtgtttgggctcctattcgtcgatcagacggattgcatgcaagtgatgaatcgtta
tcatcctctacttcccaaatgtcccaagtagtggattcttctgaagatatgaaaaatgat
gtgctgattatgcgtggtggagagtccagacatattggaagtggtcgtggaggttcttat
aggcaagggggtcggcgtggttcggcatataatatcaaggatgctgatggctccctagtg
gaagggaaattcccaaagaggggaggctcttctggtcatgtttcccatgagaaacaagtg
tgggtccaaaagtccagtcctggttcatag
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