Primulina eburnea: 140814062
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Entry
140814062 CDS
T11060
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140814062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140814062
03036 Chromosome and associated proteins [BR:
pebu03036
]
140814062
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140814062
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
140814062
mRNA degradation factors
5'-3' decay
Decapping complex
140814062
Chromosome and associated proteins [BR:
pebu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
140814062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
140814062
NCBI-ProteinID:
XP_073029022
LinkDB
All DBs
Position
15:complement(31421070..31427581)
Genome browser
AA seq
492 aa
AA seq
DB search
MSSRARYPPPGMGGGRGGGMNFNAGANPSFQPRHPTPQYVQRNPAPNNQNHQLSQNPQPQ
QWLRRTQFPHADLAVEEVEKTVQSEAVASSSQDWKAQLKIPPQDTRFKTEDVTATKGNEF
EDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKI
DQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQPVHLL
VGTPGRVLDLAKKGICVLKDCSMLAMDEADKLLSPEFQPSVQQLIRFLPANRQILMFSAT
FPVTIKDFKDRYLKKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSII
FCNSVNRVELLAKKITELGFSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID
IQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITFEDRFNLYRMEQELGTEIKQ
IPPHIDQAIYCQ
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgagagcgagatatccgccgccgggaatgggcggcggacgaggaggcgggatg
aattttaatgctggagcaaaccctagttttcaacccagacaccctactccacaatacgta
cagaggaatccggctccgaataatcaaaaccatcaattgtcgcagaaccctcagccacag
cagtggctgcgaagaactcagtttccgcacgctgatttagccgttgaggaagttgaaaaa
actgtgcaatccgaggctgttgcttcaagttcacaagattggaaggcccagttgaagata
ccaccacaggacacacgcttcaaaaccgaggatgtgacggctacgaaaggaaatgaattc
gaagactactttttaaagcgtgagcttctcatgggaatatatgagaagggctttgagagg
ccatctcccattcaggaggagagtattccaattgctctcactggaagcgatatattggcg
agggccaaaaatggaactgggaaaactgctgccttctgcattcctgctttggaaaaaatt
gatcaagataaaaatgcaattcaagttgttattcttgtgcctactagagaacttgctctc
caaacatcccaagtttgcaaagaacttgggaagcacttaaaaattgaagtcatggttact
actggtggaacaagcttgaaagatgacataatgcgactttatcagccagttcatttactt
gttgggacacctggaagagttcttgatcttgcaaaaaagggtatttgcgtattgaaagat
tgctctatgcttgcaatggatgaggccgataagcttttgtcaccggagtttcaaccttca
gttcagcaactaattcgctttttaccagcaaatcgtcagattcttatgttttctgcaaca
tttcctgttaccataaaagatttcaaagataggtacctgaaaaagccctacgtcatcaac
ctgatggatgagctcaccctcaagggtataactcagtattatgcttttgtggaagaaaga
caaaaagttcactgcctcaatacattattttcaaagcttcaaataaaccagtctatcatt
ttctgcaattccgtgaatcgagtagaacttcttgccaagaaaattacagaacttggtttt
tcttgtttctatattcacgctaagatgcttcaagatcatcgcaacagagtatttcatgat
ttccgcaatggtgcctgtagaaaccttgtatgcaccgatttattcacaagagggatcgat
attcaagcagtcaatgttgttatcaattttgattttcccaaaaactcagagacatattta
cacagggttggtcgatctggaaggtttggacaccttgggttagctgtcaatctgattacc
ttcgaggatcgcttcaatttgtataggatggagcaagaactagggacggagattaagcag
atcccaccacatatagatcaagctatatattgtcaatga
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