Primulina eburnea: 140823396
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Entry
140823396 CDS
T11060
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140823396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140823396
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140823396
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140823396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
140823396
NCBI-ProteinID:
XP_073040814
LinkDB
All DBs
Position
2:complement(43172901..43197294)
Genome browser
AA seq
2421 aa
AA seq
DB search
MIPLSTKLSAHIRFLIQSLDDSDSGSDFESIFLELCECTSHGIEGSILLLQICFDHLHIY
QKDSKNMEMHPIFASLFKHIMDKPNFSTVFCQSLSTSAINGEYLQNLSNGLHLSALDKIV
MGLALSDSENLEIRMCGKNFCMSQIAELSANSMASDSSELIQQILVFLSQSEGLSKYVDS
FMQMLSLVQLEEGAQFILAPFLSDESRDENFFRHLDLFNEGDEDDFDAILAEMEKESSMA
DMMNELGYGCTANVSQCKEILSLFLPLSDVTIAKILGTIARTYAGLDDSQNVFSAFCSAL
GVSVGLEQPSLNSWNVDVLVDSIKQLAPGINWINVMEKLDHENFYIPNETAFSFFMSVYK
HACQDPFPLHAICGFIWKNVEGQLSFLKYAISMPPEVFTFAHSERQMAYDDVVTGHKFQS
GQFNHAWTCLDLLEVLCQLAERGHANFVRSAIKNPLNHCPEVLLLGMARVNTAYNLIQHE
VSSAVLPMVLKNVSGDSLILHLWNENPNMLLRGFVDATNIDPDNYSRILDACQELKILSP
VLDMIPSYFGIRLATLASRKEFMDLENWLDDKLVAYKDAFYEECLKFLKAVQLGAQDVSS
NRFHPTGALVNTYLDAYPSFLKVLRSHVGVISSSHLSEEMEKLHSTSMRGNTRLKEGGTA
DSTSSDSYADDIEKEANSYFHQMFSGLLAIDAIIQMLTRFKESPERREQLIFECMIANLF
EEYKFFSKYPERQLKIAAGLFGSLIKHQLVTHLTLGIALRAVLDALRKPADSKMFVFGTK
ALEQFVDRLIEWPQYCNHILQISHLRVTNVDLVTFIERALARISAAHTDQDIVSNDTTDL
HHGPIQPSSTNVETPSSSFLLSGLGSSQTGPSVVPTVQLPQRSTSSLDERKLPVALSNNL
KPAQSTAGQPAVAPSSDAAGIQKSQSSLGALTHASSPGFPRSSRSTSARFGSALNIETLI
TAAERREIPIETPASEIQDKISFIVNNLSAANIEAKAKEFTEILNERYYPWFAQYMVMKR
ASIEPNFHDLYLKFLDKVNLKSLNKEVVQATYENCKVLLGSELIKSSSEERSLLKNLGSW
LGKITIGKNQVLRAREIDPKSLIVEAYEKGLMIAVIPFTSKILEPCSNSLAYQPPNPWTM
GILGLLVEIYAMPNLKINLKFDIEVLFKNLGVDLKEVTPTSLLKDKIREVEGNPDFSNKE
VGSSQPQMLNEVKSGIIPTLNQVEQPLDVASPHPGAHSHIISQYATPLHTLSGTLADDEK
LTSPGVTDQLFSAQGLPQGQSQFSVNQIPVPASNMEQQVVINKKLHALGLYLNFQSVLPI
AMDRAITEIVSSIVQRSVSIATQTTKELVLKDYALEPDETLIRNAAHLMVARLAGSLAHV
TCKEPLRGSISSQLRGLLQGLSISNELLEQAIQLVTNDNLDLGCAVIEQAATEKAIQTID
GEIAQQLTIRRKHREGAGLTYFDSSLYAQGQMGVLPDALRPKPGRLSHSQQRVYEDFARL
PWQNWSSQGSNAVPVVPIASSGSGGLSRQFASTSDQITAGIYTSGIANAGISVIPNNMKI
GYEDLDANASHLPSVSSTHIATVDTPAPQSLANDVSSFPLTSTPELHLTGPSNYLKEPVA
SVQSVIPTLASDRLGSNVLEPLLTTGDALDKYQTISEKLENLLSSDAKEAEIEEVIAEVP
AVILRCISRDEAALAVAQKAFKGLYEKAAKRAYVSAHLAILAAIRDVSKLVVKELTSWVM
YSDEDRKFSKDITVGLIGSELLNLAEYNVYMAKLIDAGRNKAATEFAISLIQTLVVNDSK
VISELHNLVDALAKFAARPGSPESLQQLVEIAKNPTANLTTLPTVIVGKEDNMRSSKDKK
VSGLPGSSREDYSATELVEPDPAGLHEQVSMLFAEWYQICELPGANDAACAHYVLLLQQR
GLLNGDDTSEHFFRRLTELSVSHCLSSEVINSSSSQSHLGQPLSFLAIDIYAKLIFSILK
FFPVDHGPSKLSLLLKILAVTVKFIQKDAAEKTSSFNPRPYFRLFINWLLDLCSLDPVFD
GTNFQVLTALANAFHALQPLKIPGFSFAWLELVSHRSFMPKLLTVNAQKGWPYFQRLLVD
LFQFMEPFLRLADLGEPIQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRN
IILSAFPRNMRLPDPSTPNLKIDLLAEISHTPRILSEVDAALKAKQMKNDVDEYLKTRQQ
GSSFLTELKQKLLLTPSEGARSGSRYNVPLMNALVLYVGMQAIQQLQSRVPPYTQSMASM
TAFLVSAALDIFQTLILDLDSEGRYLFLNAIGNQLRYPNNHTHYFSFILLYLFNESNQEI
FQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRS
CGGPKPVDDSVVSGGIPDNMH
NT seq
7266 nt
NT seq
+upstream
nt +downstream
nt
atgattcctctgtcaacgaaattgtctgctcatattcggtttctcatccagagtttggat
gactccgactcgggctccgacttcgaatcaattttcctggagctttgcgagtgtacttca
catggaatcgaaggaagcatattgctactccaaatctgttttgatcacttgcatatttat
cagaaagattcgaagaatatggagatgcatccaatatttgcttcattgtttaaacatatt
atggataaacctaatttcagtacagtcttctgtcaatcattgagtacttcagctataaac
ggggaatatctgcagaatctttctaacggactgcacttatcggcattagataaaattgta
atgggccttgctttgtctgattcagaaaaccttgagatcagaatgtgtgggaaaaacttt
tgcatgagccagattgcagaattgagtgccaattccatggcttcagattcttctgagcta
attcagcaaattctggtgtttctcagtcaatccgaaggtctatctaagtatgtagattcg
ttcatgcaaatgttatctcttgtgcagttggaggagggagcccaatttatcttagcccct
ttcctttctgatgaatcgcgtgatgaaaatttcttcaggcatttggatttattcaacgaa
ggcgatgaagatgattttgatgcgattctagcagaaatggagaaggaaagtagcatggct
gatatgatgaatgaattaggctatggatgcactgccaatgtctcacaatgcaaagaaatt
ttgtctttattcttgcctctttctgatgtcactatcgcgaagatacttggtacaattgcc
cgaacttacgcaggtcttgatgacagtcaaaatgtgttttctgcattttgttccgcgctt
ggggttagtgttggtttggagcaaccatctctgaactcttggaatgtagatgtactagtg
gattcaataaagcagctcgctcctggaattaactggataaatgtcatggagaagctggat
cacgagaatttttatatccctaatgagacagcattttccttttttatgtctgtgtataaa
catgcatgccaggatccatttcctcttcatgccatttgtggctttatttggaagaatgtt
gagggtcagctatcatttttaaagtatgccatctcaatgccacctgaagtgtttacattt
gcacattctgagaggcaaatggcctatgatgatgttgtgacagggcataagtttcaatct
ggtcagttcaatcatgcttggacctgcctcgacctcctcgaggtgctatgccaactagct
gagaggggccatgcaaattttgtgcgatctgctattaaaaatcctcttaaccactgccca
gaagttttgcttcttgggatggctcgtgtgaatacggcatataatcttatccagcatgaa
gtgtcttctgctgttcttcctatggtactcaaaaatgtttcgggagacagtttaatactt
catctgtggaatgaaaacccaaacatgttgttgcgaggattcgtagatgccacaaacatt
gaccctgacaactatagtaggattctggatgcttgccaggaattaaagatcctatctccg
gtattggatatgattccttcttattttggaattcgactggctacccttgcttctagaaaa
gaattcatggatcttgagaactggttggacgataaattagttgcatacaaagatgctttc
tatgaggagtgcctcaagtttctaaaggcggttcagcttggagctcaggatgtttcttct
aatcgctttcaccccactggcgctctcgtgaatacttatttggatgcgtatccctctttc
ttaaaggtccttcggtctcatgttggtgtcatttcgtccagtcatttgtccgaggaaatg
gaaaaattgcattccacttccatgcgtggtaatacacgacttaaagagggtgggactgct
gattctacctcttctgatagttatgctgatgatattgagaaagaagcaaattcatatttc
catcaaatgttttcgggtctactggcaattgatgcgattattcaaatgcttactcgtttc
aaggaatctccagagagaagggaacaattgatttttgagtgcatgattgctaatctattc
gaggagtacaagttcttttccaagtaccctgaaaggcagttgaaaattgccgctggtctt
tttgggtcactcatcaagcatcaacttgtgacacatctcacactcggtatcgctttacga
gctgttttagatgctctgcggaaacctgcggattcaaaaatgtttgtttttgggaccaag
gcactggaacagtttgttgaccgcctcatagagtggccacaatactgcaatcatattcta
caaatatctcatttgcgtgttacgaatgtggaccttgttacctttattgagagggcactc
gctaggatttcagcagctcatactgatcaagatattgtcagtaatgacactactgatctt
catcatggtcctatccagccatcttctactaatgtggagactccgagctcgtcttttttg
ttatctggactgggaagttcacagactgggccgtcagtcgtccctacagtccaacttccc
caaagatctacaagctctttagatgagagaaaacttcctgtggcgctgtctaataaccta
aagccagcacaatcaaccgccgggcagcctgctgttgctccttcaagtgatgcagctggc
attcaaaagtctcagagttctctcggtgcattaacacatgcttcctctcctggttttcca
cgttcatctcgatctacctcagcaaggtttggctctgccttaaacattgaaactcttatc
acagcagcagagagaagagaaattccaatagagactcctgcttctgaaattcaggataag
atatcttttatcgtaaataacttgtctgctgccaatattgaggctaaagctaaagaattt
actgagattctgaatgagcgttattatccctggtttgctcagtatatggttatgaagaga
gcaagcattgagccaaattttcatgatctgtacttaaagttccttgataaagtaaatttg
aagtctctgaacaaagaggttgtacaagccacttatgagaactgcaaggtacttctaggg
tcagaacttataaagtcaagttcagaagagcgttcattgctgaaaaatttaggaagctgg
cttgggaagattactattgggaagaatcaagttttaagggcacgagagattgatcccaaa
tctctgattgtggaggcgtatgagaagggacttatgattgctgtcattccttttacatcc
aagattctggaaccatgttctaacagtctagcttatcagcctccaaacccttggacaatg
ggtatacttggattgcttgttgagatttatgcaatgcctaatttaaaaataaatctgaag
tttgatatcgaggtcctgttcaagaaccttggtgtagatttaaaagaagtaacacctacg
tctcttctcaaggacaaaattcgagaagttgaaggtaatcctgatttttcgaataaagaa
gtaggatcttcacaacctcagatgttaaatgaggtgaagtctggaataatacctacacta
aaccaagttgagcaaccactagatgttgcttcacctcatccgggtgctcattcacatatc
atatctcagtatgcgactcctcttcatactctatctggcacattggctgacgatgagaag
ttgacaagtccgggagtaacagatcagcttttttctgctcaaggtcttccccaaggacag
tcccaattttcggttaatcagattcctgtgccagcctctaatatggaacagcaagttgtt
atcaataaaaagctccatgcattgggcctgtacttgaatttccagagtgtacttccaatt
gccatggatagagctatcacagagatagtgtccagcatcgtgcagcgaagtgtttccatt
gcaactcagacaacaaaggaacttgttttgaaggactacgctttggagcctgatgaaacc
ctcatacgtaatgcagcacatttgatggttgcaaggttggctgggagtctagcacatgtg
acatgcaaggaacctttgcgtggttcaatatcaagccagcttaggggtttgcttcagggc
ttgagcatatcgaatgaacttttagagcaagcgattcaacttgtgaccaatgacaatctg
gaccttggctgtgcagtgattgaacaagctgccactgaaaaggcaattcaaactattgat
ggggaaattgctcagcaacttactatcaggaggaaacatagagagggtgctggtcttaca
tattttgactctagcctgtatgcccaaggtcaaatgggtgttttgccggacgcccttcgc
cctaaacctggacgcctttcacactcacagcagcgtgtttatgaggattttgctcggtta
ccgtggcagaattggtccagtcagggttcaaacgcagtacccgtggttcccattgcttca
tctggcagtgggggactctctcgacaatttgcatccacatctgaccaaataactgctggc
atttacacatctggcattgcaaatgcaggaattagtgtcattcccaataatatgaaaatt
ggttacgaggatttagacgccaatgcatcccatcttcctagtgtttcttccactcatatt
gcaactgttgatactcctgctccgcaaagtcttgcaaatgatgtttcttcgttccccctc
acttctacacctgaattgcatttgacaggaccttctaattatttaaaagaaccagtggct
tcggtgcagtctgttattccaactttggcatcagatcgtcttggaagcaatgttttggag
cctttattaaccacaggtgatgcgctggataagtaccagactatttcagagaagcttgaa
aatctattgagtagtgatgccaaggaggcagaaatcgaggaagttatagctgaggttccc
gctgttatcctcaggtgcataagccgagacgaggcagctttggcagttgcccaaaaggct
ttcaagggcttatatgaaaaggcagcaaagcgagcttatgtcagtgctcatctagcaatc
ttggctgcaattcgtgatgttagcaagcttgttgtgaaggagctcactagttgggtgatg
tactctgatgaagaccggaagttcagcaaggatatcactgttggtcttattggcagtgaa
ttattaaatcttgctgaatataacgtctatatggcaaagcttattgatgcgggaaggaat
aaggctgccacagaattcgccatttctcttatccaaacattagttgtcaatgattctaaa
gtgatatcagaactacataatcttgttgatgctctggcaaagtttgctgctaggcctgga
tctcccgagtcactgcaacagctagttgagatcgctaagaaccctactgcaaatcttaca
accttgcctactgtgattgttgggaaggaagacaatatgagatcatctaaagacaagaag
gtctctgggctacctgggtcaagcagggaagactactcggccacagaattggtggaacca
gatcctgctggtctgcatgaacaggtctccatgctgtttgcagaatggtaccaaatatgt
gaacttcctggagcaaatgatgcagcttgcgctcattatgtcttactcttacagcagagg
ggcctccttaatggggatgacacctcagagcattttttccgtcggctcacggaactttca
gtgtcacactgcttatcttctgaggtgattaattctagctcttcccagtcacatttggga
caacctttgtcattccttgctattgacatctatgcgaaattgatcttctcaattctgaag
tttttccctgttgatcacgggcctagtaaactctctcttttgcttaagattcttgctgtg
actgtgaagtttattcaaaaagatgctgcagagaagacgtcctcgtttaatcccaggccg
tattttaggttgtttattaattggttgttggatttgtgttccttggacccagtttttgat
ggcacaaatttccaggttttgactgctttagcaaatgctttccatgctcttcagcctctt
aagattccagggttcagctttgcttggctcgagttggttagtcatagaagtttcatgcca
aaattactcacggtaaatgcacagaagggatggccttattttcaaagacttttggtagac
ttgttccaattcatggagccattcctgagacttgctgacctgggagagccgatacaattt
ctttataaagggacactcagggtcttgttggtgctactccatgatttcccggagttcctt
tgtgattatcatttcagcttctgtgatgtcattccaccaagttgcatacagatgcgaaat
ataatcctcagtgcatttcctcggaatatgaggttgcctgatccatctacccccaactta
aagattgacctactggcagaaatcagtcatacaccacgaattctctctgaggttgatgca
gctcttaaagcaaagcagatgaagaatgatgtggatgagtatctcaagacaaggcagcaa
gggtcttcatttcttactgagttgaagcagaagcttttgcttactccatctgaaggagct
cggtctggcagtcgttacaatgttcctctcatgaacgctcttgtcctttatgttgggatg
caggccatccaacagctgcaatccagagtcccaccatacacgcaatccatggctagcatg
accgcattcttggttagtgctgctctggacattttccagaccttgatactcgatctggac
tcagagggccgttaccttttcttgaatgctatcgggaaccagttgcgctatcccaacaac
cacactcattacttctctttcatccttctttacctgtttaacgaatcaaatcaggaaata
tttcaagagcaaatcacccgtgtcctgcttgagcgattaattgttaataggcctcatccc
tggggacttctaattacgtttattgagctcatcaagaatccccgatacaatttctggagc
cggtcttttacgagatgtgcacctgagattgagaagcttttcgaatcagtgtcaagatca
tgtgggggtccaaaaccagtcgacgatagtgtggtttctggtggcatacccgacaatatg
cactaa
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integrated database retrieval system
