Primulina eburnea: 140841424
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Entry
140841424 CDS
T11060
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140841424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140841424
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140841424
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140841424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
140841424
NCBI-ProteinID:
XP_073064928
LinkDB
All DBs
Position
9:complement(27643681..27674663)
Genome browser
AA seq
2420 aa
AA seq
DB search
MIPLSSKLSSQIRFLIQSLDESDSGSDFESIFLELCECTSHGTEGSILLLQICLDNLHIY
VKDLKNKQMHPLFASLFKHIMDKPNFSTVLCQSLSTAAINGEYLQNLSNVLHLSPLERIG
MGLALSDSENLEIRMCGKNFCMSQIAEFSANPMASDSSELIQKILVFLSQSEGLSKYVDS
FMQMLSLLQLKEESQFILAPFLSDELRDEEFFRHLDLFNEGDEVNFDTILEEMEKESSMA
DMMNELGYGCTANFSQCKEMLSLFLPLSDITIAKILGTIARTYAGLDDSQNVFTTFFSAL
GGNIGLEQPSLNSWNVDVLVDSIKQLAPGINWINVMEKLDHENFYIPNETSFSFFMSVYK
YACQDPFPLHAICGFIWKNVEGQLSFLKYAMSMPPEVFTFAHSERQMAYDDVVTGHKFQS
GQLNHAWTCHDLLEVLCQLAERGHANFVRSAIKNPLNHCPEILLLGMARVNTAYNLIQHE
VSSAVLPLVLKNVSGNSLILHLWHEHPNMLLRGFIDAMNIDPDNYSRILDACQELKILSP
VLDMIPSYFGIRLTALASRKEFMDLENWLSNKLVAYKDAFYEECLKFLKEVQLGAQDVSS
DRFHPVGALVNIYLEAYPSFLKVLRSHVGLTSSSHLAEEMEKLHATSMRGNALLKDGGTA
DSTSPDSYADDIEKEANSYFHQMFSGLLAIDTMIQMLTRFKESPDRREQLIFECMIANLF
EEYKFFSKYPERQLKIAAGLFGSLIKHQLVTHLTLGIALRAVLDALRKPADSKMFVFGTK
ALEQFVDRLIEWPQYCNHILQISHLRVTNVDLVTFIERALARISAAHTDQDIVHDTTELH
HGSIQPSSTNVETPSASVLLSGLGSSQTGPPVALTVQLPQRSTSSLEERKPPVAPSNYLK
PAQLAAGQATGAPSSDTASIQKSQSSVGASTHASSPGFPRSSRATSARFGSALNIETLIT
AAERREIPIETPASEIQDKISFIINNLSAANIEAKAKEFTDILNEHYYPWFARYMVMKRA
SIEPNFHDLYLKFLDKVNLKSLNKEVILATYENCKVLLGSELIKSSSEERSLLKNLGSWL
GKITIGKNQVLRAREIDPKSLIVEAYEKGLMIAVIPFTSKILEPCSNSLAYQPPNPWTMG
ILGLLVEIYAMPNLKINLKFDIEVLFKNLGVDLKEVTPTSLLKDKIREVEGNPDFSNKEV
GSSQPQMVNEVKSGIIPTLNQVEQLLDVAPPLPGTHSHIISQYVAPLHTTSGSLADDEKL
TSPGVTDQLSSAQCLPQVQSKFSVNQIPVPASNMEQQVIINKKLHALGLFLNFQSVLPIS
MDRAITEIVSSIVQRSVSIATQTTKELVLKDYALEPDETLIRNAAHLMVARLAGSLAHVT
CKEPLRGSISSQLRGLLQGLSISSELLEQAIQLVTNDNLDLGCAVIEQAATEKAIQTIDG
EIAQQLTIRRKHREGAGLTYFDSSLYAQGQMGVLPDALRPKPGRLSHSQQRVYEDFARLP
WQNWSSQGSNAVPTVPITSSGSGAFSRQFASTSDQITTGIYTSGIANAGISSIPKHLKTG
YEELDANTSHLPSVSSTHIATVDTPTLQSLENDVSTFPLTSTPELHLTGPSNYLKEPESS
MQSVIPTLASDRLGSNVLEPLLTTGDALDKYQTISEKLENLLISDAKEAEIQGVIAEVPA
VILRCLSRDEAALAVAQEAFKGLYEKAANRAHVSAHLAILAAIRDVSKLVVKELTSWVMY
SDEDRKFNKDITVGLIGSELLNLAEYDVYMAKLIDTGRNKAATEFAISLIQTIVVNDSKV
ISELHNLVDALAKLAARPGSPESLQQLVEIAKNPTANPTTLPTVIVGKEDNMRSSKDKKA
AGLPGSCKEDYSATESVDPDPAGLHEQVSMLFAEWYQICELPGANDTACACYVLHLQQRG
LLNGDDTSEHFFRRLTELSVSHCLSSEVINSSSSQSRVGQPLSFLAIDIYAKLVFSILKF
YPVEQGPSKLSLLLKILAVTVKFIQKDAAEKTSSFNPRPYFRLFINWLLDLCSLDPVFDG
TNFQVLTALANAFHALQPLKIPGFSFAWLELVSHRSFMPKLLVVNAQKGWPYFHRLLVDL
FQFMEPFLRLADLGESIQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNI
ILSAFPRNMRLPDPSTPNLKIDLLAEISYTPRILSEVDAALKAKQIKNDVDEYFKTRQQG
SSFLTELKQKILLTPSEGARSGSRYNVPLINSLVLYVGVQAIHQPQARVPAYSQSMASMT
AFLVSAALDIFQTLILDLDSEGRYLFLNAIGNQLRYPNNHTHYFSFILLYLFNESNQENI
QEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSC
GGPKSVDESVISGGIPDNMH
NT seq
7263 nt
NT seq
+upstream
nt +downstream
nt
atgattccgctgtcatcgaaattgtccagtcaaatccggtttctcatccagagcttggat
gaatccgattcgggctccgacttcgaatcgattttcctggagctttgcgagtgtacttca
catggaactgaaggaagcatattgctactccaaatctgtttggataacttgcatatttat
gtgaaagatttgaagaataagcagatgcatccactatttgcttcattgtttaaacatatt
atggataaacctaatttcagtacagttttgtgtcaatcattgagtactgcagctataaat
ggagaatatttgcagaatctttctaatgtgttgcacttatcaccattagagagaattgga
atgggccttgctttatctgattcagaaaaccttgagatcagaatgtgcgggaaaaacttt
tgcatgagtcagattgcagaatttagtgccaatcccatggcttcagattcttctgagcta
attcagaaaattctggtgtttcttagtcaatctgaaggtctatctaagtatgtggattcg
ttcatgcagatgttatctcttctgcaattgaaggaggaatcccaatttatcttagcacct
ttcctttctgatgaattgcgtgacgaagaattcttcaggcatttggatttattcaacgaa
ggtgatgaagttaattttgataccattctagaagaaatggagaaggaaagtagcatggct
gatatgatgaatgaattaggctatggatgcactgccaatttctcacaatgcaaagaaatg
ttgtctttattcttgcccctttctgatatcaccattgcaaagatacttggcacaattgcc
cgaacttacgcaggtcttgatgacagtcaaaatgtgttcaccacatttttttctgcgctt
gggggtaatattggtttggagcaaccgtctttgaactcctggaatgtagatgtactagtg
gattcaataaagcagctcgctcctggaattaactggataaatgtcatggagaagctggac
cacgagaatttttatatccctaatgagacatcattttccttttttatgtcggtgtataaa
tatgcatgtcaggatccatttcctcttcatgcaatttgcggctttatttggaagaatgtt
gagggtcagctatcattcttaaagtatgccatgtcaatgccacccgaggtgtttacattt
gcacattctgagaggcaaatggcctacgatgatgttgtgacagggcataagtttcaatct
ggccagttaaatcatgcttggacctgccacgacctcctcgaggtgttatgtcaactagct
gagagaggccatgcaaattttgtgcgatccgctattaagaatcctcttaatcactgccct
gaaattttgcttcttgggatggctcgcgtgaatacggcatataatcttatccagcatgaa
gtgtcttctgctgttcttcctctggtactaaaaaatgtttcaggaaacagtttaatactt
catctatggcatgaacacccaaacatgttgttgcgaggattcatagatgccatgaacatt
gatcctgacaactatagtaggattctggatgcttgccaggaattaaagatcctatcgccg
gtattggatatgattccttcttattttggaattcgacttactgcccttgcttctaggaaa
gaatttatggatcttgagaactggttgagcaataagttagttgcatacaaagatgctttc
tatgaggagtgtctcaagtttctgaaggaggttcaacttggagctcaggatgtttcttct
gatcgctttcaccccgttggtgctcttgtgaatatttatttggaagcatatccctctttc
ttaaaggtccttcggtctcatgttggtctcacttcgtccagtcatttggccgaggaaatg
gaaaaattgcatgccacttccatgcgtggtaatgcactacttaaagatggtgggactgct
gactctacctctcccgatagttacgctgatgatatcgagaaagaagcaaattcatacttc
catcaaatgttttcgggtctacttgctattgatacgatgattcaaatgcttactcgtttc
aaggaatctccggacagaagagagcagttgatttttgagtgcatgattgctaatctgttc
gaggagtacaagttcttttccaagtaccctgaaaggcagttgaaaattgccgcaggtctt
tttgggtcactcatcaaacatcaacttgtgacgcatctcaccctcggtatcgctttgcga
gctgttttagatgctctgcggaaacctgccgattcaaaaatgtttgtttttgggactaag
gcactggaacaatttgttgaccgcctcatagagtggccgcagtactgcaatcatattctg
caaatatctcatttgcgtgtgacaaatgtggaccttgttacatttattgagagggcactc
gctaggatttcagcagctcatactgatcaagacattgtccatgacactactgagcttcat
catggttctatccagccatcttctactaatgtggagactccgagcgcgtctgttttgtta
tctggactggggagctcacagactgggccgccagtcgcccttactgtccaacttccccaa
agatctactagttctttagaagagagaaaaccccctgtggcgccatctaattacctaaag
ccagcacaactagcagcagggcaggctactggtgctccttcaagtgatacagctagcatt
cagaagtctcagagttctgttggtgcatcaacgcatgcttcctcccctggttttccacgt
tcatctcgagctacctcagcaaggtttggctctgccttaaacattgaaactcttatcact
gcagcagaaagaagagagattccaatagagacacctgcttctgaaattcaggataagata
tcttttatcattaataatttgtctgctgccaatattgaggctaaagctaaagaatttact
gatattctgaatgagcactactatccctggtttgctcggtatatggtcatgaagagagca
agcattgagccaaattttcatgatctgtacttaaagttccttgataaagtaaacctgaag
tctttgaacaaagaggttatactagccacttatgagaactgcaaggtacttctagggtca
gaactcataaagtcaagttcggaagagcgttcattgctgaaaaatttaggaagctggctt
gggaagattactattgggaaaaatcaagttttaagggcacgggagattgatccaaaatct
ctgattgtggaggcgtatgagaagggacttatgattgctgtcattccttttacatccaag
attctagaaccatgttctaacagtctggcttatcaacctccaaacccttggacaatgggt
atacttggattgcttgttgagatttatgcaatgcctaatttaaaaataaatctcaagttt
gatatagaggtcctgttcaagaaccttggagtagatttaaaagaagtaacacccacttct
cttctcaaagacaaaattcgagaagttgaaggtaatcctgatttttccaataaagaagta
ggatcttcacaacctcaaatggtaaatgaggtgaaatctggaataatacctacactaaac
caagttgagcaactgcttgatgttgctccacctcttccgggtactcattcacatatcata
tctcagtatgtggctccccttcataccacatctggctcattggctgacgatgagaagttg
acaagtccgggagtaacagatcagctttcttccgctcaatgtcttccccaagtacagtcc
aagttttccgttaaccagattcctgtgccagcctctaatatggaacagcaagttattatc
aataaaaagctccatgcattgggcctgttcttgaatttccagagtgtacttccaatttcc
atggatagagctatcacagagatagtgtccagcatcgtgcagcgaagtgtttctattgca
actcagacaacaaaggaacttgttttgaaggactatgctttggagcctgatgaaaccctc
atacgtaacgcagcacatttgatggttgcaagattggctgggagtctagcacatgtgaca
tgcaaggaacctttgcgtggttcaatatcaagccagcttaggggtttgcttcagggcttg
agcatatcgagtgaacttttagagcaagcaattcaacttgtgaccaatgacaatctggac
ctcggctgtgcggtgattgaacaagctgccacagaaaaggcaattcaaactattgatggg
gaaatcgcccagcaacttactatcaggaggaaacatagagagggtgctggtctcacatat
tttgactctagcctgtatgcccaagggcaaatgggtgttttgccggatgcccttcgccca
aaacctggacgcctgtcacattcgcagcagcgtgtttatgaggattttgcacggttgccg
tggcagaattggtccagtcagggttcaaatgctgtacctactgttcccattacttcatct
ggcagtggggctttctctcggcaatttgcatccacatctgaccaaataactactggcatt
tatacatctggcattgcaaatgcgggaattagctccattcctaagcatctgaaaactggt
tatgaggagttagatgccaatacatcccatcttcctagtgtttcttccacacatattgcg
actgttgatactcctactctgcaaagtcttgaaaacgatgtttctactttccccctcact
tctacacctgaattgcatttgacaggaccttcgaattatttaaaagagccagagtcttcg
atgcagtctgttattccaactttggcatcagatcgtcttggaagcaatgttttggagcct
ttgttaaccacaggtgatgcactggataagtaccagactatttcagagaagcttgaaaat
ctattgattagtgatgccaaggaagcagaaatccagggagttatagctgaggttcctgct
gtcatcctcaggtgcctaagccgagacgaggctgctctggcagttgctcaagaggctttt
aagggcttgtatgaaaaggcagcaaaccgagctcatgtcagtgctcacctagcaatcttg
gctgccattcgtgatgttagcaagcttgttgttaaggagctcactagttgggtaatgtac
tcagatgaggaccggaagttcaataaggatatcactgttggtcttattggcagtgaacta
ttaaatcttgctgagtatgacgtctatatggcaaagctaattgatacaggaagaaataag
gctgccacggaatttgccatttctcttatccaaacaatagttgtcaatgattctaaagtg
atatcagaactacacaatcttgttgatgctctggcaaagcttgctgcaaggcctggatct
cccgagtcactgcaacagctagttgagattgctaagaaccctactgcaaatcctacgacc
ttgcctactgtaattgttgggaaggaagacaatatgagatcatctaaagacaaaaaggcc
gctgggctacctgggtcatgcaaggaagactactcggccacagaatcggtggacccagat
cccgctggtctgcatgagcaggtgtccatgctgtttgcagagtggtaccaaatatgtgag
cttcctggagcgaatgatacagcttgcgcttgttatgtcttacacttacagcagaggggc
ctgcttaatggtgatgatacctcagagcattttttccgccggctcacggaactttcagtg
tcacactgcttgtcttctgaggtgatcaattctagctcttcccagtcacgtgtgggacaa
cctttgtcattccttgctattgacatctatgcgaaattggtcttctcaattctgaagttt
taccctgttgagcaagggcctagtaaactctctcttttgcttaagattcttgctgtcacc
gtgaagtttattcaaaaagatgctgcagagaagacatcctcgtttaatcccaggccatat
tttaggttgttcattaactggttgttggatttgtgttccttggacccagtttttgatggc
acaaatttccaggttttgactgctctagcaaatgctttccatgctcttcagcctctcaag
attccagggttcagctttgcttggctcgagttggtgagtcatagaagtttcatgccaaaa
ttactcgtggtaaatgcacagaagggatggccttattttcatagacttcttgtagacttg
ttccagttcatggagccattcctgagacttgctgacctgggagagtcgatacaatttctt
tataaagggacactcagggtcttgttggtgctactccatgatttcccggagttcctttgt
gattatcatttcagcttctgtgatgtcattccaccaagttgcatacagatgcgaaatata
atcctcagtgcattccctcgcaatatgaggttgccggatccatctacccccaacctaaag
attgacctactggcggaaatcagttatactccacgaattctctctgaggttgatgcagct
cttaaagcaaagcagatcaagaatgatgtggatgagtatttcaagacaaggcagcaaggg
tcttcatttcttactgagttgaagcagaagattttgcttactccatctgaaggagctcgg
tctgggagtcgttacaatgttcctctcattaactctcttgtcctttatgttggggtgcag
gccatccatcagccgcaagccagagtcccagcatactcgcagtccatggctagcatgact
gctttcttggttagtgctgctcttgacattttccagacattgatacttgatctggactca
gagggccgttacctgttcttgaatgctatcgggaaccagttacgctatccaaacaaccac
actcattacttctctttcatccttctttacctgtttaacgaatcaaatcaggaaaatatt
caggagcaaatcacccgggtcctgcttgaacgactaattgttaataggcctcatccttgg
ggacttctaatcacgtttattgagctcatcaagaatccccgatacaatttctggagccgg
tcttttacaaggtgcgcgcctgagattgagaagctttttgaatcggtgtcaagatcatgt
gggggtccaaagtcagtcgacgagagtgtaatttcgggtggcatacctgacaatatgcac
taa
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integrated database retrieval system
