Pectobacterium parmentieri SCC3193: W5S_0512
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Entry
W5S_0512 CDS
T02514
Name
(GenBank) Sigma-54 dependent transcriptional regulator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
pec
Pectobacterium parmentieri SCC3193
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pec03000
]
W5S_0512
Transcription factors [BR:
pec03000
]
Prokaryotic type
Other transcription factors
Others
W5S_0512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
Mg_chelatase
AAA_16
AAA
NACHT
AAA_22
AAA_19
MCM
AAA_14
AAA_7
T2SSE
BrxC_BrxD
AAA_30
AAA_2
ABC_tran
TsaE
ATPase_2
AAA_29
Motif
Other DBs
NCBI-ProteinID:
AFI88638
UniProt:
A0A0H3HZN6
LinkDB
All DBs
Position
complement(558620..560197)
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AA seq
525 aa
AA seq
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MKRRVVIGVLGTTLDRRGKRENRWTKWRPTVGLCQQPDFPVDRLELLHQSRNEGMAQQVA
EDVAVVSPATQVTLQTVELNDPWNLEEVYSAFLDFASHYPFDTENEEYFVHITTGTHVVQ
ICWFLLTEARYLPAKLLQTAPGEKADRPAPQGIYAVIDLDLSRYATLTSRFQHEQQRSVS
FLKSGIETRNSTFNTLIDQIERVALRSTAPMLLTGPTGAGKSFLAQRIYQLRQSRHLVSG
RFVAVNCATLRGDNAMSTLFGHVKGAFTGALQARSGLLREADGGMLFLDEIAELGLDEQA
MLLKAIEEKRFFPFGSDKEVSSDFQLIAGTHRNLREWIAQGKFREDLYARINMWTFPLPG
LAERREDIEPNIEYELQRFTRDHQTQIRFDKEARQRYLAFACSPQAAWHGNFRELGSSIA
RMATLAEQGRITVALVEEEITRLQASWRSDAPATALPPELANIDLFEQRQLETVLDVCRT
ANSLSEAGRLLFAVSRQQKQKPNDADRLRKYLARFGLSWEGLKRV
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtcgtgtcgtcattggtgtgctgggcaccacgctggatagacggggtaaacgg
gagaatcgctggacgaaatggcggcctactgtcggcctgtgtcagcagccagattttccg
gtcgatcgtctggaactgctgcatcaatcgcgcaacgagggaatggcacagcaggtggca
gaggatgttgccgtggtgtcacccgccacgcaggtcacgcttcagactgttgagttaaac
gatccctggaatctggaagaggtctacagcgcctttctggactttgcgagccactacccg
ttcgatactgagaacgaagagtatttcgtccacatcaccaccggcacccacgtcgtgcag
atttgctggttcctgctaaccgaagcccgctatctgcccgccaagctgctgcaaaccgca
ccgggggagaaagcagatcgccctgcaccacagggtatctacgccgtcatcgatctggat
ctcagccgctacgccaccctcactagccgtttccaacacgaacagcagcgctccgtctcg
ttcctgaaatccggcatcgaaacacgcaatagcacattcaatacgttgatcgaccagatt
gaacgcgtcgcgctgcgatccaccgcgccgatgctcttgactgggccgacgggcgcgggg
aaatcctttctggcgcaacgcatctaccagctacgccagtctcgccatctggttagcggg
cggtttgttgcggttaactgtgccacgctgcgcggtgacaatgcgatgtcaacgctgttc
ggccatgtgaaaggcgcatttactggcgcattgcaggcaagaagcgggctgctgcgtgaa
gcggacggcggcatgctgtttctggatgaaatcgccgaactggggctggatgaacaggcc
atgctgctcaaggccattgaggaaaaacgctttttcccgtttggctcagataaagaagtc
agcagcgattttcagttaattgctggcacgcaccgcaacctgcgcgagtggatcgcacag
ggcaaatttcgtgaagatctctatgcgcgtattaatatgtggaccttccccttgccggga
ctggcggagcggcgggaagacatcgaacccaacattgaatacgagctccagcgcttcaca
cgcgatcatcaaacacagattcgcttcgataaagaggcacgacagcgctacctcgccttt
gcctgctcaccgcaggcagcgtggcatggcaacttccgcgaactcggctcttctatcgcc
cgcatggcgacactggcggaacaaggccgcatcaccgttgctctggtagaagaagaaatt
actcgcctgcaagccagttggcggagtgatgcgccagcaaccgcgctaccgcccgaactc
gccaacatcgacctgtttgaacagcgccagcttgaaaccgtgctcgacgtctgccgcacc
gccaattcgctctccgaagccggtcgcctgctgttcgccgtctcacgccagcaaaaacaa
aagcccaacgatgccgaccgactgcgtaagtatctggcacgttttgggctgagctgggag
gggttgaagcgggtataa
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