Phycodurus eques (leafy seadragon): 133410362
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Entry
133410362 CDS
T09682
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133410362 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pee03041
]
133410362 (sf3b1)
03036 Chromosome and associated proteins [BR:
pee03036
]
133410362 (sf3b1)
Spliceosome [BR:
pee03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133410362 (sf3b1)
Complex B
133410362 (sf3b1)
Complex C
U2 SnRNP specific factors
133410362 (sf3b1)
Chromosome and associated proteins [BR:
pee03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
133410362 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
TPR_DNAAF5
HEAT_MROH2B_C
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
TPR_IMB1
VPS15-like_hel
Adaptin_N
UNC45-central
GST_N_4
Motif
Other DBs
NCBI-GeneID:
133410362
NCBI-ProteinID:
XP_061547434
LinkDB
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Position
12:complement(6111280..6138355)
Genome browser
AA seq
1324 aa
AA seq
DB search
MAKIAKTHDDIEAQILEIQGMKATLVEEGDEKGVGLVSTGFYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEEDTATSLLGQKKQGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDE
YKARRMQMIISPERLDPFADGGKTPDPKLQVRSYMDVMREQNLSKEEREIRLQLAEKAKS
GDLKAVNGSAASQAAAAAAAAAAAAKRKRRWDQTADQTPTNSTPKKMSSWDQADASVETP
GHTPAHTPSNSRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTPGHATPG
HGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDE
TPASQMGSSTPLLTPGKTPIGTPAMNMATPTPSHLMSMTPEQLQAWRWEREIDERNRPLT
DDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQP
SGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQIT
DKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEP
LLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALG
IPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQK
VRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAE
YANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQ
HRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLG
AADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRL
NNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAI
VNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICF
ELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA
ETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDR
DLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVA
IGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNMYTRYEL
DYVL
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgacgatattgaagcccagatcctggagatccagggg
atgaaggccactctggtggaggaaggagacgagaagggagtcggcctcgtttcaactggg
ttttatgaccaggagatctatggaggaagcgacagccgttttgccggctatgtcacttcc
atcgctgccaacgaacaggaagacgacgatgaagaggatacggcgacgagtttgctggga
cagaaaaagcaagggtaccatgctccagtggccattctcaatgccattcctcagtcagat
gaacaatatgatccatttgcggagcatcgtccacagaagatcgcggagcgggaggacgag
tacaaagctcggcgcatgcagatgatcatctcgccggagcgcctcgacccctttgcagat
ggaggcaaaactccagaccccaagctgcaggtcaggtcgtatatggacgtcatgagagag
cagaacctgtccaaggaagagagagagattcgtctgcagctcgcagaaaaggccaagtca
ggcgacctgaaagctgtcaatggctccgctgccagccaagctgccgccgccgccgccgct
gctgctgctgctgcaaaacgcaagcgccgctgggaccagacagctgaccaaactcctacc
aattctactcccaaaaagatgtccagctgggaccaggctgatgcctcggttgagacccca
ggacacacgccggcgcacacaccttcaaacagccgatgggatgagacccccggccggccc
aaaggcagtgagaccccgggggccacacctagctcacgcatgtgggaccccacacccagc
cacacgccggctggcgcggccacgccaggcagggacacaccaggtcacgccacacccggc
cacggcggagccacgggaagcgtccgtaagaaccgctgggatgaaacgccaaagactgaa
agggagaccccgggacacggcagcggctgggccgaaaccccacgtacagacaggggggat
gagtctgtaggggagacccccactccaggagccagcaagaggaaatctcgctgggatgaa
acacccgcgagccagatgggctcctcaacaccacttctgacccctgggaagacaccaatt
ggaacccccgctatgaacatggccaccccaacacccagtcacctgatgagcatgactcca
gagcagctgcaggcctggaggtgggaacgggaaattgacgagaggaaccggcctctcaca
gatgacgagcttgacgccatgtttccggaaggatacaaggtgttgcctccaccagctggc
tacgtgcctatccgaacaccagcccgtaagctctcagcaacgcctactcccattggcggc
atgactggcttccacatgcaagtggaggaccgtaccaccaaacagatgaatgaccaaccc
tctggaaacctcccgttcctcaaacctgatgacatccagtattttgacaaactgctggtt
gaggtagatgagtccacgttgagcccagaagaacagaaagaacgaaagataatgaagctg
ctgttgaagattaaaaatggaactccacctatgaggaaggcggccctgcgtcagatcaca
gacaaagctcgtgagttcggagcaggacccttgttcaaccagatcctaccactgctcatg
tcccccaccctggaggaccaagagcgccacctgctggtgaaagtcatcgaccgtattctc
tacaaactggatgaccttgttcgaccctacgtacacaagatacttgtggtgatcgagccc
ctgctaattgatgaggactactacgccagagtagaaggcagagagatcatttccaactta
gcaaaggcggctggcttggcaaccatgatctccaccatgcgtcccgacatcgacaacatg
gacgagtatgtgagaaacaccaccgccagggcatttgccgtggttgcatccgcccttggc
atcccctccctgctgcccttcctcaaagccgtgtgtaaaagcaagaagtcatggcaggcc
cgccacacgggtatcaagattgtacagcagattgccatcctcatgggctgcgccatcctg
cctcacctgcgcagcttggttgagatcattgagcacggtctggttgatgagcagcagaag
gtgaggaccatcagcgccctggccattgccgctctggctgaagctgctacaccctatggt
atcgaatcctttgactcagtgctcaagcctctctggaagggtatcagacagcacagagga
aaaggtttggctgccttcctcaaagctattggctacctgatccctctgatggatgctgag
tacgccaactactacacccgagaggtgatgctaatcctcatccgagagttccagtcccct
gatgaagagatgaaaaaaatcgttctcaaggtggttaagcagtgctgtggcaccgatggt
gtggaggccaactatatcaagactgagatcctgccccccttcttcaagcacttttggcag
cacaggatggctttggaccgacgtaactatagacagttagtggacaccacagtagagctg
gccaacaaggtgggagccgcagaaatcatctctcgcatcgttgatgacctgaaagacgag
gcagagcagtatcgtaaaatggtgatggagaccatcgagaaaattatgggcaacctgggc
gctgccgatatcgaccacaaactggaggagcagttgattgacggcatcctgtacgccttc
caggagcagaccacagaggattctgtgatgctgaacggcttcggcacggtggtgaacgcc
ctcggcaagcgcgttaagccctacttgcctcagatctgcggtacggtgttgtggcgtctc
aacaacaagtcggccaaagtgcgtcagcaggccgctgacctcatctcccgtaccgccgtg
gtcatgaagacatgccaggaggagaagctgatgggtcacttgggtgtggtgctgtacgaa
tacctaggagaagaataccctgaagtgctgggcagcatcctgggagcactgaaggccatt
gtaaatgttattggtatgcacaagatgactccccccatcaaagatttgctccctcgtttg
actcccattttaaagaacagacacgagaaagtgcaggagaattgcatcgatctggtgggc
aggatagcggacaggggtgctgagtacgtgtcagccagagagtggatgaggatttgtttt
gagttgctggaacttctcaaggctcacaaaaaggccatccgcagagccactgtcaacaca
tttggctacattgccaaggcaattggcccacatgacgtcttggctaccttgctcaacaac
ttgaaggtgcaggagcgtcagaaccgcgtctgcaccacggtggccatcgccatcgtggcc
gagacgtgttcaccctttactgtcctgcccgcactcatgaacgagtaccgcgtgcctgag
ctcaacgtgcagaatggtgtgctcaagtcactgtccttcctttttgagtacattggcgag
atgggcaaagactacatctatgcagtcacgcccctcctggaggacgcgctgatggacaga
gatctagtccacaggcaaactgccagtgccgtggtccagcacatgtccctgggtgtttac
ggttttggctgtgaggactccctcaaccacttgctcaactacgtgtggcccaacgtgttt
gagacgtcgcctcacgtcatccaggctgtcatgggcgcactggagggcctgagggtggcc
atcggtccctgccgcatgctgcagtactgcttacagggtctgttccacccggcacggaag
gtgcgcgacgtctactggaagatttacaattccatctacattggctcacaggatgccctc
atcgcccactatcctcaagtgtacaatgacgagaagaacatgtacacccgctacgagctg
gactacgtcttgtaa
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