Planctopirus ephydatiae: Spb1_12170
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Entry
Spb1_12170 CDS
T06220
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
peh
Planctopirus ephydatiae
Pathway
peh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
peh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Spb1_12170 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peh03021
]
Spb1_12170 (rpoB)
03400 DNA repair and recombination proteins [BR:
peh03400
]
Spb1_12170 (rpoB)
Enzymes [BR:
peh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Spb1_12170 (rpoB)
Transcription machinery [BR:
peh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Spb1_12170 (rpoB)
DNA repair and recombination proteins [BR:
peh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Spb1_12170 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
BSH_YknX
YqfD
Motif
Other DBs
NCBI-ProteinID:
QDV29332
UniProt:
A0A518GKZ2
LinkDB
All DBs
Position
1482999..1486715
Genome browser
AA seq
1238 aa
AA seq
DB search
MPNPAQRVIETHETRHFGSIRGEFAISELTQIQTASYHRFLQLESEPRERADDGLEAILR
EVFPIESYDQKYRLEYIKYELGKPRYTPLECRQLRLTYGRPFRVWLRLMKEQPQEEEVYL
GDLPIMIGGGEFIINGSERVVVSQLHRSPGVDFVMSAEPGEKKTFSCRVIPERGSWIELN
IGKRDTLNVRIDQSGKFSAMTFLRAMDPAYGRTKDLVKLFHNVVTFKVSDSHFVEHVAGK
HAADDIVYPAGHERMGEIICEACHVITKPLAEEIKESGIKTVDVAEKSDDPIIMDSLIED
STASHEDALLRIYQRLRPGNPPQLEKAMELFKEKFFDVNRYRIGRVGRFRVNRKFDQDVP
DTEMTLRPEDIINSIRYVMKLRTGDATAHVDDIDNLGNRRLRTIDELAQEELRKGFLKLR
RTVQERMSLKDVEEMSPRSLINPKSVSAAIDFFFGRGELSQVVDQTNPLATLTHERRLSA
LGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLSIFAKVDDYGFLITPYR
KVVDKKVTEEIVWLRADEESHVYIAPADTPVQDDRMRDERVMCRHHNDFLWLPASQVNYI
DVAPCQMVGVSAGLIPFLEHDDANRALMGSNMQRQGVPLLIAEPPLVGTGLEGPVAQNSG
MVLRAEKSGKVTYVDGDCIEIDGKRTPLRKYTGLNERTCLNQTPVVRVGDKVKKGDILVD
SAAVGDGELALGRNVLVAFMSWEGFNFEDAIILSERLVKEDVYTSIHIDEFDVEVRETKL
GREEFTRDIPNVSDKALRHLDDDGVIHVGTRVEPGDILVGKVSPKAKTELTPEEKLLHAI
FGRAGEDVKNESLEVPSGVEGIVIHTEKFSRRMSLSETERKKFETDLKRVEESGNDLIAA
AFKTFLTHFETALEKKLQDDDGRDLGKLDDAKFLATYAESFLHRFETMDLRSPQKKADCK
KSIKEFWGPVEEAIDDRDRKLNTMKRGDELPSGVLQMVKVYVAQKRQISVGDKMAGRHGN
KGVISKVLPVEDMPFLADGTPVDIILNPLGVPSRMNVGQILETHLGWAAAKLGFRAKCPV
FDGPAEETIRDLLKLAGLPEDGKAQLLDGRTGEPFEQKTTVGYIYMLKLHHLVEDKVHAR
ATGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTKIYE
SMVKGENTLEAGTPASFEVLNNEIRGLCLNMQLEKSLT
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaccccgcccagcgtgtgattgagactcatgaaactcgccactttggatctatt
cgtggtgagtttgccatctctgaactcacacaaatccagacagcttcttaccatcgcttt
ctgcaactggagagtgagccacgtgagcgagccgatgacggtctggaggcgattcttcgt
gaagtcttccccatcgagagctacgatcagaagtatcgcctggagtacatcaagtacgaa
ctcggtaagcctcgctatacaccactcgagtgccgccagcttcgcttaacctacggacgt
cctttccgggtctggctgcggttgatgaaggagcagccacaggaagaagaagtttatctg
ggtgatttgcccattatgattggtggcggcgaatttatcatcaacggttctgagcgcgtt
gtcgtcagccagttgcaccgatctcccggtgtcgactttgtgatgtcagccgaaccgggt
gaaaagaagactttctcttgccgtgtcattcccgagcgtggtagctggatcgagctcaat
atcggcaagcgggacactctgaatgtccgtattgatcagtcaggcaagttcagtgcgatg
accttcctgcgggcgatggatcctgcatatggccgtaccaaagatctggtcaagctgttc
cacaacgtggtgacattcaaggtcagtgacagccacttcgtcgagcatgttgctggcaag
cacgctgcagacgatatcgtttatccagccggtcacgagcggatgggcgagatcatctgc
gaagcctgtcatgtcatcacgaagccactggctgaagagatcaaggaatcggggatcaag
acagttgatgtcgccgagaagtcggatgatcccatcatcatggacagtctgattgaagat
tcgacagcgagtcatgaagacgcgctgctccgcatctaccagcgtctgcgtccaggcaat
ccacctcagttggaaaaggccatggagctcttcaaagagaagttctttgacgtgaatcga
tatcggattggtcgcgtgggtcgtttccgcgtgaaccgcaaatttgatcaggacgtgcct
gataccgagatgactcttcgtcctgaagacatcattaactcgatccggtacgtgatgaag
ttgcgaacgggtgatgcgacagcccatgtcgatgatatcgataacctgggcaatcgccgc
ctgagaaccattgatgaactcgcacaggaagaacttcgcaaaggcttcctgaagctccgc
cgcaccgttcaggagcgaatgagcctcaaagacgtggaagaaatgtcaccacgctctttg
atcaatccgaagagtgtctcggcagcgattgatttcttcttcggtcgtggcgagctctca
caagtggtggatcagaccaatcctctggccacgttgactcacgagcgcaggctcagtgcc
cttggcccgggcggcttgaaccgcaagcgggcgggctttgaagttcgcgatgtgcatatt
tcgcactatggccgcatctgcccgattgaaacacccgaaggtaccaacatcggtctgatt
tcgagcctcagcatttttgcgaaggtcgacgattacggtttccttatcaccccttatcgc
aaggttgtggataaaaaggtgactgaagaaatcgtctggctgcgagccgacgaagagtcg
catgtttacatcgccccggctgatacgccggtgcaggacgacaggatgcgcgatgagcgt
gtcatgtgccgtcaccacaacgacttcctctggctgcccgcttctcaggtgaactatatc
gacgtcgcaccttgccagatggtgggtgtctcggcgggtttgattccgttcctagagcac
gacgatgccaaccgcgccctgatgggttcaaacatgcagcggcagggtgttcctctgctg
attgccgaaccacccttggtggggacaggcctggaaggtccggtcgctcagaacagcgga
atggtgctccgtgctgagaaatccggaaaggtgacttacgttgatggggattgcatcgag
atcgatggcaagcgtactccacttcgcaagtacacaggcctcaatgagcgaacctgtttg
aaccagactcctgtcgtcagagtgggtgataaggtcaagaagggtgatatccttgttgac
agtgccgctgtgggtgatggtgagttggcactgggacgaaacgtgctggttgcgtttatg
tcctgggaaggtttcaacttcgaagacgcgatcattctctccgaacgtcttgtgaaagaa
gacgtgtacacgtcgattcacattgatgaattcgatgtcgaagttcgcgaaacgaaactg
ggtcgagaagagttcactcgcgacattcccaacgtgagcgataaggctctgcgtcatctg
gatgatgacggcgtgatccatgtcggtacacgcgttgagccaggagatattctggtgggt
aaggtttcgcccaaagccaagaccgaactgacaccggaagaaaagctcctgcatgcgatc
ttcggacgggccggcgaagacgttaagaacgaatcgctggaagtccccagtggtgtggaa
gggatcgtcattcatactgagaaattctctcgaagaatgagtctctcggaaaccgaacgc
aagaagttcgaaactgacctgaagcgtgtggaagagtctggaaatgacttgattgccgct
gctttcaagaccttcctcactcattttgaaacagctctggaaaagaaactgcaagacgac
gatggtcgtgatcttggcaagctcgatgatgccaagttcctggccacttatgccgaatcg
ttcctgcatcgtttcgaaaccatggatctccgcagtcctcagaagaaggccgattgcaag
aagtccatcaaggagttctggggccctgtggaagaagcgattgatgatcgtgaccgcaag
ctgaacaccatgaagcgtggcgatgagttgcctagcggtgtgctgcagatggtgaaggtc
tatgtcgctcagaaacggcagatctctgtcggtgacaagatggccggtcgtcacggcaac
aagggggtgatttccaaggtgctacctgttgaggatatgccattcctcgccgatggaaca
ccggtcgacatcattctcaacccactgggtgtgcccagccgtatgaacgtggggcagatt
ctggaaactcacctgggctgggctgcagccaagctgggcttccgggccaaatgcccggtg
tttgatggccctgctgaagaaaccattcgagatctgctcaaactggcaggtcttccagaa
gatggtaaggctcaattgctggatggccgcactggtgagccgtttgagcagaagacgaca
gtgggctatatttacatgctcaagctccaccacctggtggaagataaagttcacgcccgc
gccacgggtccttactcgctgattactcagcagccgctgggtggtaaggcacgctttggc
ggacagcgattcggtgagatggaagtgtgggctctggaagcctacggtgccgcctatatt
ctgcaggaattgctcacggtgaagagtgacgatgtggaaggccgcacgaagatctacgaa
tcgatggtcaagggagaaaacactctcgaagccgggacacctgccagctttgaagtgctc
aacaacgaaattcgtggtctttgcctgaacatgcagctggagaagagtctcacatag
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integrated database retrieval system
