Pelagibacterium flavum: OF122_09285
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Entry
OF122_09285 CDS
T08676
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pem
Pelagibacterium flavum
Pathway
pem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OF122_09285 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pem03021
]
OF122_09285 (rpoB)
03400 DNA repair and recombination proteins [BR:
pem03400
]
OF122_09285 (rpoB)
Enzymes [BR:
pem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OF122_09285 (rpoB)
Transcription machinery [BR:
pem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OF122_09285 (rpoB)
DNA repair and recombination proteins [BR:
pem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OF122_09285 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UYQ73931
UniProt:
A0ABY6ITZ0
LinkDB
All DBs
Position
1858213..1862355
Genome browser
AA seq
1380 aa
AA seq
DB search
MATTFNGRRKVRKSFGSIREVTEMPNLIEVQKASYDQFLMVDEPEGGRGDEGLQSVFRSV
FPITDFSNTASLEFVRFEFEQPKYDVEECRQRDMTFAAPLKVTLRLIVFEVDEDTGTRSV
KDIKEQDVYMGDMPFMTSNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RIIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLKALGLDAEEILDTYYDIQTYTKSE
KGWNKPFDAEKMKGTKPVYDLIDAKTGNVVHEGGARLTARAAKKIVESGVTHLLATNEDL
YGMYLARDIVDLSNGEIFAEAGDEIDEKVLETLVEKGFDELPILDIDHINVGAYIRNTLA
VDKNESREDALFDIYRVMRPGEPPTIDTAEAMFNSLFFDSERYDLSAVGRVKMNMRLDLD
APDTMRVLRKEDIVAVVRTLVELRDGKGDIDDIDNLGNRRVRSVGELMENHYRLGLLRME
RAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHVTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIETPYR
KVVDGKVTDEVVYLSAMEEAKHHVAQANATLSDKGEFINELVVARHAGEPSLTPREMVDL
MDVSPKQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEAVVARDS
GAAIGALRTGIVDQVDATRIVIRATEENDASKSGVDIYNLMKFQRSNQSTCINQRPLVVV
GDHVQAGDIIADGPSTELGDLALGRNVLVAFMPWNGYNFEDSILLSEKIVQDDVFTSIHI
EEYEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVHIGAEVQAGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRIPPGDGGIVVEVRVFNRHGIDKDERAMAIEREEI
ERLAKDRDDEQSILDRNVYARLKEMLFGKAATTGPKGYVAGTKLNDSIFDAHARSKWWQF
AVDDDKLMSEIESLQGQYDESRRLLEQRFIDKVDKLQRGDELPPGVMKMVKVFVATKRKV
QSGDKMAGRHGNKGVISRIMPVEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETHLGWA
ARGMGRKIDAMMDAYRQSKDVTPLKKEISVLYEGDDYVGDLDDDGIVRLGQQLSKGVSIA
TPVFDGAKEADIVTMLERAGLDGSGQSTLYDGRTGEEFDRKVTVGYIYMLKLHHLVDDKI
HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK
VYEAIVRGDDTFEAGIPESFNVLVKEIRSLGLNVELTDMEADNDEPGGDPELAPPADAAE
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggctaccacgttcaacgggcgccgcaaggtgcgcaagtcctttgggtcaattcgtgaa
gtcacggagatgccgaacctgatcgaggtgcaaaaggcatcttacgatcagttcctgatg
gtcgatgagcccgaaggcgggcggggcgatgaaggcctccagtcggtcttccggtcggtc
ttcccgatcaccgatttttccaacaccgcgtctctcgaattcgttcgtttcgaattcgag
cagcccaaatatgacgtcgaggaatgccgccagcgcgacatgacctttgccgcgccgctc
aaggtgacgctgcggctgatcgtgttcgaggtcgacgaagacaccggcacccgctcggtc
aaggacatcaaggagcaggacgtctatatgggcgacatgcccttcatgacgtcgaacggc
accttcatcgtcaacggcaccgaacgcgtcatcgtctcccagatgcaccgttcgcctggc
gtgttcttcgatcacgacaagggcaagacccattcgtcgggcaagcttctgtttgccgcg
cgcatcattccctatcgcgggagctggctcgatatcgaattcgacgccaaggacatcgtc
tatgcgcgtatcgatcgccgccgcaagatcccggtgacctcgctgctcaaggccctgggc
ctggacgcggaagagatcctggacacctattacgatatccagacctacaccaagagtgaa
aagggctggaacaagccattcgacgccgagaagatgaagggcaccaagcccgtttacgat
ctgatcgacgccaagaccggcaacgtggttcacgaaggtggagctcgcctgacggcccgt
gccgccaagaagatcgtcgaatccggtgtgacccatctgctggccaccaacgaagatctc
tacggcatgtaccttgcccgcgacatcgttgacctgtccaacggcgaaatctttgccgaa
gccggcgacgagatcgacgagaaggtgctggaaacgctggtcgagaagggctttgacgag
cttccgatcctcgacatcgaccacatcaatgtcggtgcctatatccgcaacacgctggcc
gtggacaagaacgaaagccgcgaagacgcgctgttcgacatctaccgcgtgatgcgtccg
ggcgagccgcccaccatcgacaccgccgaagccatgttcaactcgctgttctttgacagc
gagcgctatgacctttcggcggtcggccgcgtgaagatgaacatgcgtctcgatctcgat
gcgcccgacaccatgcgcgttctgcgcaaggaagacatcgtcgctgtcgttcgcaccctg
gtcgaactgcgtgacggcaagggcgatatcgacgacatcgacaacctcggcaaccgccgt
gtgcgttcggtcggcgaattgatggaaaaccattatcgtctcggccttctgcgcatggag
cgcgccatcaaggagcgcatgagctcggtcgagatcgacacggtgatgccccaggatctc
atcaacgccaagccggctgcggctgcggtgcgcgagttctttggttcgtcccagctttcc
cagttcatggatcagaccaacccgctttcggaaattacccacaagcgccgtctttcggcg
cttgggccgggcggtctgacacgcgagcgcgcaggctttgaagtccgcgacgttcacgtg
acccattatggccgtatctgcccgatcgaaacgccggaaggtcccaacatcggcctgatc
aactcgctggccaccttcgcgcgcgtcaacaagtacgggttcatcgaaaccccgtaccgc
aaggtcgtggacggcaaggtgactgacgaggtcgtctatctctcggccatggaagaagcc
aagcaccacgttgcgcaggccaacgccacgctgagcgacaagggcgagttcatcaacgaa
ctggtcgtggcccgtcacgccggtgagccctcgctcaccccgcgtgaaatggtcgacctg
atggacgtttcgcccaagcaggtggtctcggttgccgcttcgctgattccgttcctggaa
aacgacgacgccaaccgcgccctgatgggctcgaacatgcagcgccaggccgtgccgctt
ctgcgtgcggaagccccgttcgtgggcacgggcatggaagccgtcgtggctcgggattcg
ggtgccgcgatcggtgccctgcgcaccggtatcgtcgatcaggtggatgcgacccgtatc
gttatccgcgcgaccgaagaaaacgatgcgtccaagtcgggcgtcgacatctataacctg
atgaagttccagcgctcgaaccagtcgacctgcatcaaccagcgtccgctggtggtggtt
ggcgatcatgttcaggccggcgacatcattgccgatggtccttcgaccgaactgggcgat
ctggccctgggccgcaacgtgctcgtcgcgttcatgccctggaacggctacaacttcgaa
gattcgatcctgctttccgaaaagatcgttcaggacgacgtcttcacctcgatccatatc
gaggaatatgaagtgatggcccgcgacaccaagctcggaccggaagaaatcactcgcgat
attcccaacgtttcggaagaagcgctgaaaaatctcgacgaggccggtatcgttcacatc
ggtgccgaagtgcaggcgggcgatattctggtgggcaagatcacgcccaagggcgaaagc
ccgatgacgccggaagaaaagctgctgcgcgccattttcggtgaaaaggcatcggacgtc
cgcgacacctcgctgcgcatccctcccggggatggcggtatcgttgtggaagtgcgcgtg
ttcaaccgtcacggcatcgacaaggacgaacgtgccatggcgatcgagcgtgaggaaatc
gaacgcctcgccaaggaccgtgacgacgaacagtcgatcctcgaccggaacgtctatgcg
cgtctcaaagagatgctgttcggcaaggccgccacgaccgggcccaagggctatgtcgca
ggcaccaagctcaacgactcgatctttgatgctcacgcacggtccaagtggtggcagttt
gccgtcgatgacgacaagctgatgagcgagatcgaatcgctccagggccagtatgacgag
agccgtcgtctgctcgagcagcggttcatcgacaaggtcgacaagctccagcgtggcgac
gagcttccgccaggcgtgatgaagatggtcaaggtgttcgtcgcgaccaagcgcaaggtg
cagtcgggcgacaagatggccggccgtcacggcaacaagggcgttatctcgcgcatcatg
ccggtcgaggacatgccgttcctcgaagacggtacgcatgtcgacatcgtgctcaacccc
ctgggcgtgccgtcgcgcatgaatgtggggcagatcctcgagacgcaccttggctgggcg
gctcgcggcatgggccgcaagatcgacgccatgatggacgcctatcgtcagtccaaggac
gtcacgccgctcaagaaggaaatctcggttctctacgagggcgacgactatgtcggcgat
ctcgacgatgacggcatcgttcgtctgggccagcagctttccaagggcgtttccattgcg
accccggtgttcgacggggccaaggaagccgatatcgtcaccatgctcgaaagggcaggg
ctcgacggttcggggcaatcgacgctctatgacggccgtaccggtgaagagttcgaccgc
aaggtgacagtgggctacatctacatgctcaagctgcaccaccttgtggacgataagatc
cacgcccgttcgatcggtccatacagcctggttacccagcagccgctcggtggcaaggcc
cagttcggcggacagcggttcggcgagatggaggtgtgggcgctcgaagcttacggcgct
gcttacaccttgcaggaaatgctcaccgtcaagtcggacgacgttgccggccgcaccaag
gtttacgaagccattgtgcgtggcgacgacaccttcgaagcggggatccccgagagcttt
aacgttctcgtcaaggaaatccgctcgctgggcctcaatgtcgaactgaccgacatggaa
gcggacaatgacgagccgggtggcgatcccgaactcgcacctcctgcggacgcggcggaa
taa
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integrated database retrieval system
