Pseudomonas entomophila: PSEEN1572
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Entry
PSEEN1572 CDS
T00362
Name
(GenBank) putative ATP-dependent RNA helicase, DEAD box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
pen
Pseudomonas entomophila
Pathway
pen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSEEN1572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pen03019
]
PSEEN1572
03009 Ribosome biogenesis [BR:
pen03009
]
PSEEN1572
Messenger RNA biogenesis [BR:
pen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSEEN1572
Ribosome biogenesis [BR:
pen03009
]
Prokaryotic type
rRNA helicases
PSEEN1572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
CAK14434
UniProt:
Q1ID25
LinkDB
All DBs
Position
1641279..1642967
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AA seq
562 aa
AA seq
DB search
MTQETGGFAALELNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPAS
RQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLL
EVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEARLPNAQAVLDARIKKLTNSLAPLVAEAEATHGELFDRLTAALGCSPRAL
SAALLRKATNGQALDLATVEREQPLVPTYTPRERSGERTERGERSDRGDRGDRERRAPMP
LAEGRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERL
LTKLKDTRVAGKQLKLRRYRED
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggattcgccgctctcgaactcaatccgaacatcgttgctgcc
gtcctggccaccggctatgaagagccgtcggccattcagcaacagtcgatcccgatcatc
ctcgccggtcatgacatgatcggccaggcgcagactggcaccggcaagaccgctgccttc
gccctgccgatcctcaacaagatcgacgtgagcaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagccaccgctttcgaaacctacgccaagcag
atgccgggcgttaacgtggtggccgtgtacggtggtgccccgatgggcccacaactgcgt
gccattcgcaatggcgcgcagatcgtcgtcgccaccccgggccgcctgtgcgaccacctg
cgtcgtgacgagaaagtcctgtccaccgtgcagtacctggtactggacgaagccgacgaa
atgctcaagctgggcttcatggacgacctcgaagtgatcttcgacgccatccccgcctcg
cgccagaccgtgctgttctccgccaccctgccgtcgtcgatccgttcgatcgccgaacgt
cacctgcgcgagcccaagcacgtcaagatccagagcaagacgcaaaccgtcaccgcgatc
gaccaggcccacctgatggtccacgccgaccagaagatcccggccgtgctgcgcctgctg
gaagtggaagagttcgacgcgctgatcgccttcgtgcgtaccaagcaagccaccctggac
ctggccgccgcgctggaagccaagggctacaaggctgccgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgactcgctcaaggatggccgcctggacatcgtcgtc
gccaccgacgtcgccgcccgtggcctggacgtaccgcgcatcacccacgtgttcaacgtc
gacatgccgtacgacccggagtcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgtgcgctgctgctggtcaccccgcgtgagcgccgcatgctgcaggtcatc
gagcgcgtcaccgggcagaaggtcgccgaagcgcgcctgccgaacgcccaggccgtgctg
gatgcccgcatcaagaagctgaccaacagcctggcgccgctggtagccgaagcggaagcc
acccatggcgagctgttcgaccgcctgaccgctgccctgggttgcagcccgcgcgcactg
tccgccgccctgctgcgcaaggccaccaatggccaggcgctggacctcgctaccgtcgag
cgcgagcagccgctggtaccgacctacaccccgcgcgagcgcagcggtgagcgtactgag
cgtggtgagcgcagcgaccgtggcgaccgtggtgaccgcgagcgtcgcgcgccgatgccg
ctggccgaaggccgcgtgcgttgccgtaccgccctgggtgcccgtgacggcatcgccgcc
aagaacctgctgggcgcgatcctcaacgagggtggcctggcccgcgacgccatcggccgc
atccaggtgcgtgacagcttcagcctgatcgagctgccggaagatggcctggagcgtctg
ctgaccaagctcaaggacacccgcgtggccggcaagcagctgaagctgcgtcgctaccgc
gaggattga
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integrated database retrieval system
