Peribacillus sp. R9-11: RE409_00670
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Entry
RE409_00670 CDS
T10247
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
peri Peribacillus sp. R9-11
Pathway
peri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
peri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RE409_00670 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peri03021
]
RE409_00670 (rpoB)
03400 DNA repair and recombination proteins [BR:
peri03400
]
RE409_00670 (rpoB)
Enzymes [BR:
peri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RE409_00670 (rpoB)
Transcription machinery [BR:
peri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RE409_00670 (rpoB)
DNA repair and recombination proteins [BR:
peri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RE409_00670 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WMX55845
LinkDB
All DBs
Position
125165..128734
Genome browser
AA seq
1189 aa
AA seq
DB search
MTGQLVQYGRHRQRRSYARISEVLDLPNLIEIQTASYQWFLDVGLKEMFQDISPIEDFTG
NLSLEFIDYSLAEPKYSVEETKERDVTYSAPLRVKVRLVNKETGEVKDQDVFMGDFPLMT
ETGTFVINGAERVIVSQLVRSPSVYYNGKMDKNGKLGFSATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPITVLMRALGFGTDQEIIDLIGDNEYLRNTLEKDNTESVEKALLEIYERL
RPGEPPTVDNAKSLLVSRFFDPKRYDLANVGRYKINKKLHIKNRLFGQRIAETLIDPETG
EIIVEKGTMLDRRTLDRILPHIEAGIGFKTFHPSGGVVEEETLLQPIKVFAPNDAEGEKV
INIIGNAYVTDQVKNITPADIISSISYFFNLLHGVGITDDIDHLGNRRLRSVGELLQNQF
RIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAEL
THKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNPY
GFIETPYRRVDPETGRITSQIDYLTADEEDNYVVAQANVRLSDDGSFLDDDVVARFRGEN
TVVPRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLQPEAPRVGT
GMEYVSAKDSGAAVICKHPGIVEHVESREVWVRRVSEVDGQQVKGNIDKYRLLKFIRSNQ
GTCYNQRPIVSVGDNVVKGEILADGPSMEKGELALGRNVLVAFMTWDGYNYEDAIIMSER
LVKDDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGD
LLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGDE
LPPGVNQLARVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPYLPDGTPVDIMLNPL
GVPSRMNIGQVLELHLGMAARALGIHVASPVFDGATEEDVWGTIAEAGMSRDAKTVLYDG
RSGEAFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGL
DVKILNAEDREIEMRDLEDEEEANQADKLSLDSETKDMVASEVGAPAKE
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaacttgttcagtatggacgacaccgccaacgtagaagttatgcaagaatc
agtgaggttttggatcttccgaatctgattgaaattcaaacagcttcttatcaatggttt
ctagatgtaggtttaaaagaaatgttccaggatatttctcctattgaggattttacaggt
aatttatcattagagttcatcgattacagcctagctgaaccgaagtactctgtagaagaa
acgaaagaacgcgatgttacttactctgctccacttcgtgtgaaagtgcgccttgttaac
aaagaaacaggggaagtaaaagaccaggatgtatttatgggcgacttccctctgatgact
gaaacaggtacatttgtcatcaatggtgcagaacgggtaattgtatcccaattagtgcgc
tcaccgagtgtttactacaatggtaaaatggataaaaacggtaagcttggattctctgcg
accgttattcctaaccgtggcgcatggctcgaatacgaaacagacgccaaggatgtagtg
tatgttcgaatcgatcgcactaggaaattgcctattacggtattgatgcgtgcgcttgga
ttcggaaccgatcaagaaattattgatttaatcggtgacaatgaataccttcgtaacact
cttgaaaaggacaacactgagagtgtggaaaaagcattactagaaatttatgagcgtcta
cgcccgggtgaaccacctacagtcgataacgcgaaaagtcttttagtatcccgctttttt
gatccaaaacgttatgatttagctaacgtaggtcgttataaaataaacaaaaaactgcat
attaagaaccgtttgtttgggcaacgtattgcggagactttgattgatccagaaacaggg
gaaattatagttgaaaaaggtacaatgcttgaccgtcggactcttgatagaattctgcct
catattgaagcgggaatcggttttaaaacattccacccatctggtggcgtggtagaagaa
gaaactcttcttcaacctattaaagtatttgcaccaaacgatgctgaaggcgaaaaagtg
attaatatcatcggtaatgcttacgtgaccgaccaggttaaaaacattacaccggctgat
atcatttcttctattagctatttctttaacttattgcatggtgtaggaatcacagatgat
attgaccatttaggaaaccgtcgcctgcgttctgttggtgaattgctgcaaaaccaattt
agaattggtttatctcgtatggaacgtgtcgttcgtgaaagaatgtctattcaggatacg
aatacaatcactccacagcaactaattaacattcgtccagttattgcatctattaaagaa
ttctttggaagctctcagctttctcaatttatggatcaaactaacccgctggctgagttg
acgcataaacgtcgtctatctgcattgggacctggtggtttaacacgtgaacgtgcgggc
tttgaagtacgtgacgttcattactcccactatggccgtatgtgtccgattgaaacgcct
gagggaccgaatattggtttaattaactcattatctagtttcgcaaaggtaaacccgtat
ggtttcatcgaaacaccatatcgtcgtgtggaccctgagacaggtagaattacaagccaa
attgattacttaacagctgatgaagaagataactatgtagttgctcaagcgaatgttcgt
ctatcagatgacggatcattccttgatgacgatgtcgttgctcgtttccgcggtgaaaat
accgttgtaccgcgtgaccgcgtagattacatggatgtatctcctaaacaggttgtatct
gccgcgacagcatgtattcctttcttggaaaatgatgactccaaccgtgcccttatggga
gcgaacatgcaacgtcaagcagtacctttgcttcaaccagaagcccctcgtgttggaaca
ggtatggaatatgtttcagcgaaagactctggtgctgctgtcatctgtaaacatcctggt
atcgtagaacacgttgaatcacgtgaagtatgggtacgtagggtaagtgaggttgacgga
caacaagtaaaaggaaacattgataaatatcgtttattaaaattcatccgttccaaccaa
ggaacgtgctataaccaacgcccaatcgtaagtgttggtgacaacgttgtaaaaggtgag
attcttgctgatggtccttcaatggaaaaaggtgagttagcgcttggacgtaacgtatta
gttgccttcatgacttgggatggatataactatgaagatgccatcatcatgagtgaacgt
ttagttaaagatgatgtgtacacttctattcatattgaagaatatgagtctgagtcccgt
gatacgaaattgggaccggaagagatcacacgtgatatcccgaatgttggggaagatgcg
cttcgcaatcttgatgagcgcggaattatccgtgtcggcgctgaagtaaaagacggagac
cttctagttggtaaagttacgcctaaaggtgtaacagaattgactgctgaagaacgttta
ttacatgcaattttcggtgaaaaagcacgtgaagtacgggatacatcacttcgtgtacct
cacggcggcggtggaatcgttcttgatgttaaagtatttaacagagaagatggcgatgaa
ctacctcctggtgtaaaccaacttgcgcgtgtatatatcgttcaaaaacgtaagatccac
gaaggcgataaaatggctggacgtcatggtaacaaaggggtaatctctaggattcttcct
gaagaagatatgccttacttaccagatggcacaccggtcgacatcatgttaaacccattg
ggtgtaccatcacgtatgaacatcgggcaggtgctggagcttcacttaggtatggcagca
cgcgcgcttggcattcatgtagcatcgccggtattcgatggtgctactgaggaagatgtt
tggggtacgattgcagaagctgggatgtcccgtgatgcaaaaactgtcctttatgacgga
cgttcaggtgaagcattcgataaccgtgtgtctgttggtgtcatgtatatgattaaactt
gcacatatggttgatgataaacttcatgctcgttcaactggaccttactcccttgttacg
caacagccacttggtggtaaagcgcaatttggtggacagcgtttcggtgagatggaggta
tgggcacttgaagcttatggtgctgcttatacattacaagaaatccttaccgttaaatca
gatgatgtcgtcggtcgtgtgaagacttacgaagcgattgtcaagggtgaaaatgtccct
gagcctggtgtccctgaatccttcaaagtattgattaaggaacttcaaagcttaggattg
gatgttaaaattcttaatgccgaagaccgtgaaattgaaatgcgtgacttggaagatgaa
gaagaagccaaccaagcagacaaattaagccttgattcagaaacaaaagatatggttgct
tccgaagtaggggcaccagctaaagaataa
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integrated database retrieval system
