Populus euphratica (Euphrates poplar): 105122644
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Entry
105122644 CDS
T05872
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105122644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105122644
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105122644
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_MalT
TPR_10
TPR_19
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
105122644
NCBI-ProteinID:
XP_011020187
UniProt:
A0AAJ6XIG3
LinkDB
All DBs
Position
Unknown
AA seq
862 aa
AA seq
DB search
MDARDSTSNRDVSSSGGSGTTTGGGGGEEDPILSVTAALAKDAWLHFNSRRFNECLEVLY
QLKQKKEDDPKVLHNIAIAEYCRDGYPDPKKLLEVLNNIERKSKELAHTSGEQVETVNNL
GNKVISGSKGSGATTLQASATNSTSVVYMDEFDPTVARLNIAIIWYHLHEYSKALSVLEP
LYHNIEPIEERTALHVCLLLLDVALACQDASKSADVLLYLEKAFGFGCVGQSENGNTAQQ
QSASLVAKSSYVPSSSPGMDANSDLASSENALEKSLSRTLSLSDETLEYESMFSLDISGQ
DLARPAGLSFSTDLSRNPIDRSFSPSEMKLKLHLYKVQFLLLTRNLKQAKREVKLAINIA
RVRDSPMALLLKSQLEYARSNHRKAIKLLMAASNRTEMGISSMFNNLGCIYYQLGKYHTA
SVLFSKALSSSSSLQKDKPWKLLTFLQDKSLLIVYNCGVQHLACGKPLLAARCFEKASLV
FYNRPLLWLRLAECCLVALERGLLKASRVLSDKSDVTVHVFGKGKWRHLAVESGISSNGY
VDSFEKEDMFLGSDSQLKLSVPLARQCLLNALHLLDYSGLNHLKPGLPSNLSLDENEMSE
AGSMKNSNHKNLTGFDSKTSTVGLGQVNANGDAKEQKGGTSQEIMQNSISFHEDIRRREN
QMLKQALLANLAYVELELENPEKALSTARSLLELPVCSRIYIFLGHVYAAEALCLLNKPK
EAAEHLSIYLSGGNNVELPFSQEDFEQWRVEKAFDYEEMNGGSVATKNSSPEESQGIVFL
NPEEARGTLYTNFAVLCAAQGDLERAHHFVTQALSLVPNHPQATLTAVYVDLMLCNTQAA
IGKLKQCSRVRFLPSGVHLSKC
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggacgcacgagattcgacatcgaaccgagacgtctcatcgagcggcggcagcggcacc
accaccggcggtggaggaggagaagaggaccctatactttccgtcactgccgcgcttgcc
aaagacgcctggttacactttaactctcgccggttcaatgagtgcctcgaggttttgtat
cagctaaagcagaaaaaggaagacgatccaaaggtacttcataatattgctattgcggag
tattgtagagatggttatccagatccaaagaagttgcttgaagtgcttaataacattgag
aggaaaagcaaagagcttgctcacacttcaggagagcaggtggagactgttaacaatctt
gggaataaagttatttcagggtctaaaggaagtggtgcaacgacactccaagcatcggcc
acaaacagcacatctgttgtttacatggatgaatttgatcctacagtagcaaggctaaat
attgcgattatttggtatcatcttcatgaatattcaaaggcattatcagttctggaacct
ttgtatcacaatattgaacctatagaggagagaactgctcttcatgtttgccttctgttg
ctagatgttgctcttgcctgccaggatgcatccaaatctgctgatgttttattatatcta
gaaaaagcttttggctttggttgtgtgggtcaaagtgagaatgggaacacagcacagcaa
caatctgcaagtcttgttgcaaaatcttcgtatgttcctagcagttcaccagggatggat
gctaattcagatttagcttctagtgagaatgctttggaaaagtctttatcgagaactcta
tctttatcagatgagacccttgagtatgaatcgatgttctcactagacataagtgggcaa
gacttagcaaggcctgcgggtctttcattttcaactgatctttcaaggaacccgattgat
aggtccttttctccttccgaaatgaagcttaagttgcatctttacaaggtccaatttcta
cttctcaccaggaatttgaaacaagcaaagcgcgaagtcaagcttgctatcaacattgca
cgtgtaagggattcgcccatggctctcctcttgaaatctcagcttgaatatgctcgtagt
aaccaccgtaaggccatcaagttgttaatggcagctagtaatcggacggagatggggatt
tctagcatgttcaacaaccttgggtgcatctattatcagcttgggaaataccatacagca
tctgtgctcttttccaaggcactgagtagtagttcatctcttcagaaggacaagccgtgg
aagttgttaactttcttgcaggacaaatctctcctcattgtatataattgtggagtgcag
cacttggcttgtgggaaacccttactggctgctcgctgttttgagaaggcaagtttagtt
ttctacaaccggcctttattgtggctccgacttgctgaatgctgtctggtggctttggag
aggggtcttctaaaagctagtcgagttctatcagacaagtcagatgttacagttcatgtt
tttggaaagggaaagtggaggcatcttgcagttgaaagtgggatttcaagcaacgggtat
gtggattcttttgaaaaggaagatatgtttttgggtagtgacagccaactgaagctctct
gttccccttgctcggcagtgtctcctcaatgctctgcatttgctggattactctggatta
aatcatttgaagcctggcttgccttctaatttatccttggatgaaaatgaaatgagcgaa
gcaggatctatgaagaattcaaaccacaagaatttaactggctttgattccaaaacatca
actgtaggcctaggtcaggttaatgcaaatggggatgcaaaagaacagaagggtgggaca
agtcaggagatcatgcagaattctatctctttccatgaagatattcgcaggagagaaaat
cagatgctcaagcaagcacttctcgcgaacttggcatatgtagagttggaattggaaaat
cctgagaaggccttgtcaactgcaaggtctcttttggaacttccagtatgttcgagaatt
tatatttttctgggtcatgtgtatgcagctgaggctctctgcttgctgaacaagcccaag
gaagctgctgagcatttgtcaatttatttgtctggaggaaataatgtggagttgcctttt
agccaggaagacttcgagcaatggagagtggaaaaagcttttgattatgaagagatgaat
ggaggatcagttgctacgaagaattcttcccctgaagaatcacaaggtattgtgttcctc
aatccagaagaggcacgtggaaccctttacacaaattttgcagtcctgtgtgcagcacag
ggtgatcttgagcgggcccaccattttgtgacacaagcattatcccttgtgcctaatcat
ccacaagccactctgacggcagtttatgttgatcttatgctctgtaacacacaagcagcg
atcggcaagttaaaacaatgtagccgagtgagattcctcccaagcggtgtacatttgagt
aagtgttga
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