Populus euphratica (Euphrates poplar): 105131830
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Entry
105131830 CDS
T05872
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105131830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105131830
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105131830
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105131830
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
BRCC36_C
Motif
Other DBs
NCBI-GeneID:
105131830
NCBI-ProteinID:
XP_011033307
UniProt:
A0AAJ6UNL2
LinkDB
All DBs
Position
Unknown
AA seq
2377 aa
AA seq
DB search
MIELSSTIPSQIRFLLHTLNEANVDSVFRDLCQFMEYGFEGSVLTLQTCLEYLKTDLKNM
QLEAVLVSVFKFVLDKPNSSTVFCQSLRSLEITENFLEKLSNSLKLSVAEKIGIGLALTD
AENADTRMFAKKFCMAQIEELCANPVPISSVDQVQNIVMFLQRSEGLSKHVDNFMQMLSL
MQPKDVTPFVLTPLISDELREANFWRNMDLFHGSTESEFDAILAEMEKEMSLGDIVKELG
YGCTFDALHCKEILSPFLPLSEVTISKILGTIARNLTGLEDNQSTFSTFGLALGCDITTD
LQQLSSWDVDILVKTIKQLAPGTNWIQVIENLDHEGFYIPNEEAFSFLMSAYRQACQNPF
PLHAICGSLWKNTEGQLSFLKHAVLAPPEVFTFAHSGRQLNYMDAVHGHKFQVGHANHAW
LCLDLLDVLCQLAETGHASSVRSILEYPLKHCPELLLLGMSHINTAYSLLQYEVSFRVFP
LILKSPACGGMMLYLWHLNPNLVLRGFVEAGNVESNIMTKILDVCQELKILPSVLDMIPF
PSGIRLAALASRKELIDLEKWLGNNLITYKDSFFEECLRFLKEIQLGGSQDFSAKPFHHQ
SNVVNHYSETSSSFLKVLQAHTSLIVSTQLSEEMERLHVTVMDSNPRLQNGSSADSSTPD
GFSDDVEAEANSYFHQMFSGQLTIDAMVQMLARFKESSVKREQLIFECMIGNLFEEYRFF
PKYPERQLKSAALLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFVFGTKSLEQFV
DRLIEWPQYCNHILQISHLRGTHAELVAFIERALARISSGHLESDGTNNASSAHHHSLLQ
AASANGESNIPQLGQQLSSTLHSQQRHESSLDDRLKASAAPFNETKPFLSSGGQSSAASS
DASSIQKNTVASSLLSSSPGFVRPPRAVTSTRFGSALNIETLVAAAERRETQIEAPGSEI
QDKISFIINNISVANVEAKAKEFTEILKEQHYPWFAQYMVMKRASIEPNFHDLYLKFLDK
VYSKALSKEIVQASYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREI
DPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLAEIYSMPNLKM
NLKFDIEVLFKNLGVDMKDIAPTSLLKDRKREIEGNPDFSNKDVGASQSQLVPEVKSGII
SPLNHVELPLEVASPPNSGGHTHLLSQYTSPVHALMEDDKLAALGLSDQLPSAQGLFQAT
PSQSTYSASQLPTAIPNIGTHVIINQKLNSWGLHVHFQRLVPAVMDRAIKDIVSGIVQRS
VSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRSSISSQLRNS
VQSFSLTSEILEHAVQLVTNDNLDLGCAVIEQAATDKAIQTIDTEIAQQLVRRKHRDGVG
QTFFDTNMYTQSSMGVVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSHSSHVIPAGSA
SSGASGLASAYGSVSSDVASEAIESNSAALLSASSIHSAAADGVIPQSAENNSISAPFSA
TAASSELHPVESSDVKESGVSSEPSSAASERAGSSVADASLNTRDALDKYQIIALKLETL
VASDSREAEIQGVVTEVPEIILRCVSRDEAALAVAQKVFKGLYENASNSFHVNACLAILA
AIRDVCKLVVKELTSWVIYSDEERKFNKDITLGLISSELLNLAEYNVHMAKLIDGGRNKA
ATDFAISLVQALVVEESDVISELHNLVDALAKLAAKSGSAESLQQLIEIVRNPGANAASL
TSLTLGKEDKARQSRDKKPISQLIANREDYGNIESVEPEGFREQVSMFFAEWYRICELPG
ANDAASTHYILQLHQNGLLKGDEMTDRFFRVLTELSVAHCLSSEVINSSALQSPQQVQSL
SFLAIDIYAKLVLSILKVEQGSSKLFLLSKILSVTMKLIQKDSEERKNSFNARPYFRLFI
SWLQDLLSPEPVIDGVNFQILTAFAGVFHNLQPLKVPGFSYVWLSLVSHRSFMPRLLTGN
AQKGWPYVQRLLVDLFQFLEPYLRNAELAVPVHLLYKGTLRVLLVLLHDFPEFLCDYHFT
FCDVIPPSCIQMRNIILSAFPLNMRLPDPSTPNLKIDLLPEIMEPPRIFSEVDAALKAKQ
MKADVDEYLKTRQQGSSFLTELKQRLLLITSEAVSAGPRYNVPLINSLVLYAGMQAIQQL
QARTPHGQSAGNTVPLAVFLVDAALDIYQTLILDLDTEGRYLFLNAVANQLRYPNNHTHY
FSFVLLYLFAESNQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFI
RCAPEIEKLFESVARSCGGLKPMDDSMASSWVSESAH
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagctatcttcaacaataccgagtcagattcggttccttcttcacaccttgaac
gaagccaacgtcgactccgtgtttcgcgacctctgccagttcatggagtatggatttgaa
ggaagtgttctgacgctccaaacatgtttggaatatttgaagactgacttgaaaaacatg
cagttggaagccgtacttgtttcggttttcaagtttgttttggacaaacctaattccagt
actgtgttttgtcagtctttaagaagtttggagatcactgaaaatttcttagagaagttg
tctaattcgctgaagctatccgtggctgagaaaattggcattggtctggcgctcaccgat
gcggagaacgctgataccaggatgtttgcaaagaagttttgtatggctcaaattgaggaa
ttgtgtgcgaatcctgttccaataagttcagtggatcaagttcagaatattgttatgttc
ctccagcggtcggaggggctatccaagcatgttgataactttatgcagatgttgtcgtta
atgcagccaaaagatgttaccccatttgttttaactccactgatttctgatgaactgcgc
gaggccaatttttggaggaatatggatctcttccatggaagtacagagagtgaatttgat
gctattttagctgaaatggaaaaggagatgagcttgggagatattgtgaaagagttaggc
tatggatgcacatttgatgcattgcactgcaaagaaatattatctccttttctgcccctg
tcagaagttacaatctctaagatacttggaacaattgcccgcaaccttaccgggcttgag
gacaaccagagcacattttcaacgtttggcttggctcttggttgtgacattacaactgat
cttcaacagttaagctcctgggacgttgacatccttgtaaaaacaatcaagcaacttgct
cctggtactaactggattcaagttattgaaaacctggatcatgaaggattttacatacct
aatgaggaggcattctcctttctgatgtctgcatacagacaggcatgccagaatcctttc
cctctccatgcaatctgcgggtctctttggaagaatactgaaggtcaactatcttttctg
aaacatgcagtacttgcaccaccagaagtgttcacctttgctcattctggaaggcagctg
aactatatggatgctgtgcatggccataaattccaagttgggcatgctaatcatgcatgg
ctgtgtcttgaccttttggatgtgctttgtcaacttgctgagacaggtcatgctagttct
gttcgatcaattctcgagtatcctcttaaacactgtccagaattgttgcttcttgggatg
tcacatatcaatactgcctacagccttctccaatacgaagtgtctttcagggttttcccc
ctcatactcaaaagccctgcttgtggtggtatgatgctttacctttggcatctgaaccct
aatcttgttttgcggggatttgtagaggcaggcaatgttgaatcaaacatcatgaccaag
atattggatgtatgtcaagagctaaagattttgccatcagtattggacatgattcccttt
ccttctggtatccgattggcagcccttgcttcaagaaaagagcttatagaccttgaaaag
tggctgggtaataatttaattacatacaaggattcattcttcgaggaatgtctcaggttt
ctgaaggagattcagcttggtggatcacaggatttttctgcgaaaccttttcatcatcaa
agcaatgttgtgaatcattattcagaaactagttcatccttcctgaaggtccttcaagct
cacaccagcttaattgtctctacccaactgtctgaggaaatggaaagattgcatgtgaca
gtaatggactctaatccaaggctgcaaaatggtagctcagcagattcatctacccctgat
gggttttcagatgatgttgaggcagaggcaaactcttatttccatcaaatgttttctggt
cagctgacaattgatgcaatggttcaaatgcttgctagattcaaggaatcttcagtgaaa
agggaacaattgattttcgagtgcatgattggcaatctatttgaagaatatagattcttc
cctaagtatccagaaaggcaactaaaaagtgctgctcttcttttcggttctgttatcaag
caccagcttgttactcatctcactcttgggattgctttgcgtggtgttttagatgcactt
cgcaaacctccagattccaaaatgtttgtgtttggtaccaagtctttggagcagtttgtg
gatcgtttgattgaatggccacagtattgcaatcacatcttacaaatatctcatctgcgt
ggcactcatgctgagcttgttgctttcattgaacgagcacttgccaggatttcgtcaggg
catttggaatcagatggaactaacaatgcttcttctgctcatcaccatagtttgttacag
gctgcctcagcaaatggggagtcaaacattccccagcttgggcagcaactttcatctaca
ctccacagtcaacagagacatgaaagttctcttgatgaccgtctgaaagcatctgcagct
ccatttaatgaaactaaaccatttctatcttccggtgggcaatcttcagctgcttcaagt
gatgcttctagcattcagaagaatacagttgcttcatctttgttgtcttcttcacctggt
tttgtccgtccaccccgtgcagtgacctctaccaggtttggctctgcattgaacatcgaa
acacttgtagctgctgctgagagaagagaaacacaaatagaggctccaggatcagagatt
caggacaaaatatctttcataattaataatatttcagttgcaaatgttgaagctaaagca
aaagaattcactgaaatactgaaggagcagcactatccgtggtttgcccagtacatggtc
atgaaaagagcaagcattgagcccaattttcacgacttgtacttgaagttccttgataaa
gtttattcaaaagctttaagtaaggagattgtccaagcctcatatgagaactgcaaggtt
cttttgggatcagagctcataaaatctagttctgaagaacgttccttgctaaaaaatttg
ggaagctggcttggaaaattaactattggaaggaaccaagttctgagggcgcgtgaaata
gatcctaaatctttgatcatagaggcatacgagaagggattgatgattgcagttatacca
tttacatccaaggttctggagccatgtcaaagcagtctagcataccaacctcctaatcct
tggactatgggcattcttggattgctggctgagatctactcaatgccaaacttgaaaatg
aacctcaaatttgacatagaggtcttgttcaagaaccttggcgtagatatgaaggacatt
gcaccaacttctctcctgaaggatcggaaaagggaaattgaagggaatcctgatttttcc
aacaaagatgttggagcatcccaatcacagctggttcctgaagttaaatctggaattata
tctccactaaatcatgttgagctaccgcttgaggttgcaagcccacctaattctggtggt
catactcatttgttatctcagtatacctctcctgttcatgcgttgatggaggatgacaaa
ctagctgcattaggcttgtctgatcagctcccttctgctcaaggtctattccaagcgact
ccatcccagtcaacatattctgctagtcagcttcccacagcaatacccaatatcggaact
catgttattatcaatcagaaactaaattcttggggcttacatgtgcattttcaaagactg
gttcctgctgtaatggatagagctatcaaagatatcgtttctggtattgttcaacgaagt
gtttctattgcaacacagacaacaaaagagcttgttctgaaggattatgccatggaatcc
gatgaaacaagaatatataatgcagcacacttaatggttgccagtttggctggaagctta
gctcatgtaacatgcaaggagccattacggagttcaatatcaagtcagctaaggaattca
gttcagagtttctctttaacaagtgaaattctggagcacgctgtgcaacttgttaccaat
gataaccttgatcttgggtgtgcagtgattgaacaggctgccacagataaggccatacaa
accattgacactgaaatagctcaacaactagtaagaaggaagcatagagatggtgttggt
caaacattttttgacacaaacatgtacacccaaagttctatgggtgttgtacctgaggcc
cttcgccccaagcctggtcacttgtctgtttctcaacagcgagtttatgaggatttcgtt
cgtcttccatggcaaaaccagtctagccatagctcacatgtcattcctgcgggttctgct
tcttctggtgcttctggtcttgctagtgcatatggttcagtttcatcagatgtggcttct
gaagctattgaatctaattcagctgcacttcttagtgcttcttcaattcatagtgcagca
gctgatggtgttatcccacaaagtgctgaaaacaattcaatcagtgctccattctctgct
actgctgcttcctctgaacttcacccggtggaatcctcagatgtaaaggaatcgggagtt
tcttctgagccatcttcagctgcttctgagcgtgctgggagcagtgttgcagatgcttcc
ctgaacactagggatgcattggacaagtaccagattattgcgctgaagttggagacttta
gtggctagtgattctagagaagctgaaatccagggggtagttacagaggttcctgaaatc
atactcagatgtgtcagtcgagatgaggctgcattggctgtggcacaaaaggttttcaag
ggtctatatgagaatgcatcgaacagttttcatgttaatgcttgccttgcaattctggct
gctattcgtgatgtgtgcaagcttgtggttaaagaactcactagttgggtgatttattca
gatgaggagcgaaagttcaataaagatattactcttggcctgataagcagtgaattgctc
aatcttgcagagtacaatgttcatatggcaaaacttattgatgggggaaggaataaagct
gcaacggactttgccatttctcttgtccaagctttggttgttgaagaatccgatgtcatc
tctgaactccacaatcttgttgatgcactggccaagcttgctgcaaaatctggatctgcc
gagtcattacaacagctgattgagattgtcaggaatcctggtgccaatgcggcttctcta
actagtttaactcttggaaaggaggacaaggcaagacagtccagagacaagaagcctatc
agtcagctgatagctaacagggaagactatggcaacatcgaatctgtggaaccagaaggt
tttcgtgagcaggtttccatgttttttgcggaatggtaccggatatgtgaacttcctggt
gcaaatgatgcagcttctacccattacatcttacagctgcatcaaaatggattattgaag
ggggatgaaatgacagatcgctttttccgtgtactcacggagctttctgttgcgcactgc
ttgtcctctgaggtgatcaattccagtgcactgcaatcacctcagcaagtgcagagtctc
tcattccttgctattgatatttatgcaaaattggtcctgtcaatcctaaaggtggagcag
ggatcaagtaaactttttcttttgtcaaagattttgagtgtcactatgaaactcatacaa
aaggattcagaggagaggaaaaattcttttaatgcaagaccatatttcagattgtttata
agctggcttcaagacctcctttccccagagcctgttattgatggtgtaaacttccagatc
ttgacagcctttgctggtgtgttccataatctgcagcctcttaaagttcctggtttcagc
tatgtgtggctctcattagtgagtcataggagtttcatgccaagattgctcacaggaaac
gcgcagaagggctggccttatgtccagcggttgctggtggatttgttccagttcctggag
ccatatttgaggaacgcagagctagcagtgccagttcacttgctttataaaggtacgctt
agggtgcttttggtgctgctgcatgatttcccagagttcctttgtgattaccatttcact
ttctgtgatgtgattcctccaagctgcatacaaatgcgtaatattattctcagtgctttc
cctctcaatatgaggctgccagatccatctactccaaacttaaagattgatttgctacca
gaaattatggaacctcctcgcattttttctgaggttgatgcagctcttaaagcaaagcag
atgaaagctgatgtagatgagtatctcaagacgaggcaacagggttcttcattcctgact
gaattgaagcagagattgctccttataacaagtgaagctgtgtctgctggaccccgctat
aatgtaccgttgatcaactcccttgtgctttatgctggaatgcaggccatccagcagctt
caggcaagaacacctcatggacaatcggcggggaatactgttcctttagctgtatttttg
gtggatgctgctttagatatttaccagacgctaatactggacctagacactgaaggccga
tacctctttctaaatgccgttgccaatcaactacgctatccgaacaaccatacacattac
ttctcttttgtcttgctttacttgtttgctgaatcaaaccaggaaattatccaagagcag
attacaagagtgcttttggaacgcctaattgttaatcgaccacatccatggggccttctg
attactttcatcgagctcatcaagaatcctaggtacaacttttggaatcgatcattcata
aggtgcgcaccggagatagagaaactttttgaatcggttgcaagatcatgcggaggctta
aagcccatggatgacagtatggcctccagttgggtttctgagagcgcacattga
DBGET
integrated database retrieval system
