Pantoea eucalypti: EE896_17990
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Entry
EE896_17990 CDS
T06282
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pey
Pantoea eucalypti
Pathway
pey03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pey00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EE896_17990 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pey03021
]
EE896_17990 (rpoB)
03400 DNA repair and recombination proteins [BR:
pey03400
]
EE896_17990 (rpoB)
Enzymes [BR:
pey01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EE896_17990 (rpoB)
Transcription machinery [BR:
pey03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EE896_17990 (rpoB)
DNA repair and recombination proteins [BR:
pey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EE896_17990 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QGF28602
LinkDB
All DBs
Position
complement(3860363..3864391)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIA
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVVYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQFTTPQILDIFFEKVVFEIRDNKLQME
LVPERLRGETATFDIEANGTVYVEKARRITARHIRQLEKDGIQHIEVPVEYIAGKVVAKD
YIDESTGELIIAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVIDGLVS
DEIHYLSAIEEGNYVIAQANAPLDDNGAFVDDLVTCRSKGESSLFSRDQVDYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMHAGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIQNVLISGGVEADKLDKLPRERWLELGLTDEAKQNQLEQLAEQYDE
LKHEFEKKLEGKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVAK
LREFIQRAYDLGSDLRQKVDLNTFSDDEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ
LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccgcaa
gtactggacataccttatctcctttccatccagctcgactcgttccagaagtttatcgag
caagatccagaaggtcagtacggactggaagctgcattccgttctgtattccctattgcg
agctacagcggcaactctgagttgcagtatgtgagctatcgcctgggtgaacctgtcttt
gacgtgaaagagtgtcagatccgtggcgtgacctattcggcaccgctgcgcgtgaaactg
cgtctggtggtctatgagcgcgaagcgccagaaggcaccgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgaccgacaacggtacctttgttatcaatggt
accgagcgcgttatcgtttctcagctgcaccgtagtcctggcgtgttctttgatagcgat
aagggtaaaacccactcatcgggtaaagtgctgtacaacgcacgtatcatcccttaccgc
ggatcatggctcgactttgagtttgacccgaaagataacctgtttgtccgtattgaccgt
cgtcgtaagctgccggccactatcatcctgcgtgcgttgcagttcactacacctcagatc
ctcgatatcttcttcgagaaagtggtgtttgaaatccgtgacaacaagctgcagatggag
ctggtgcctgagcgcctgcgcggtgaaaccgctaccttcgatatcgaagcgaacggcacc
gtctacgtcgaaaaagcacgccgtattactgcgcgccatatccgtcagctggaaaaagat
ggcattcagcacatcgaagttccggttgaatatatcgcgggcaaagtggtcgctaaagac
tacatcgatgagagcaccggtgagctgatcattgcagcgaacatggaactgtcactggat
ctgctggctaaactgagccagtccggtcacaagcgcatcgaaacgctgttcaccaatgat
ctggaccacggtccttatatctccgagaccctgcgtgtcgacccaaccagcgatcgcctg
agcgcactggttgagatctaccgcatgatgcgtcctggtgagccgccaacacgcgaagca
gcagagaacctgtttgagaacctgttcttctctgaagatcgttacgatctgtctgctgtt
ggtcgtatgaagttcaaccgctcattactgcgtgatgaaatcgaaggttcaggcatcctg
agcaaagacgacatcatcgaagtgatgaagaagctgatcgacatccgtaacggtaaaggc
gaagtggacgatatcgaccacctcggtaaccgtcgtattcgttcagtcggtgaaatggct
gagaaccagttccgtgtgggtctggtgcgtgttgagcgtgcggttaaagagcgtctgtca
ctgggcgacctggataccctgatgccacaggacatgatcaacgcgaagccgatttcggcc
gcggtgaaagagttctttggttcaagccagctttctcagttcatggatcagaacaacccg
ctgtcagagattacgcacaaacgtcgtatctctgctctcggcccgggtggtttgacgcgt
gagcgtgccggcttcgaagtgcgtgacgtacacccaacgcactacggtcgtgtctgccca
atcgaaacccctgaaggtccgaacatcggtctgatcaactccttgtctgtttatgcacag
acgaacgagtacggtttccttgagacaccttatcgccgtgttatcgacggtctggtttct
gacgagattcattacctttctgctatcgaagagggtaactacgttatcgctcaggcgaac
gcccctcttgatgataacggcgcgtttgttgatgacttagtcacctgccgtagcaaaggc
gaatcaagtctgttcagccgtgatcaggttgactacatggacgtttcgacccaacagatc
gtttctgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgcgccctg
atgggtgcgaacatgcaacgtcaggccgttccgactctgcgtgctgacaagccgctggtt
ggtaccggtatggaacgtgctgttgctgttgactccggtgttaccgccgttgcgaaacgt
ggcggtaccgttcagtacgtcgacgcatcacgtatcgttatcaaagtgaacgaagacgaa
atgcatgctggcgaagccggtatcgacatttataacctgaccaaatatacccgttctaac
cagaacacctgcatcaaccagatgccatgtgtttctctgggtgagccggttgagcgcggc
gacgtgctggcagatggcccgtccaccgatctgggtgaactggcactgggccagaacatg
cgcgtagcgttcatgccgtggaacggctacaacttcgaagactccatcctggtctccgag
cgtgtggttcaggaagatcgctttacgactatccatattcaggaactggcttgcgtgtcg
cgtgacaccaaactggggccggaagagattaccgctgatatcccgaacgtgggtgaagcc
gctctctctaaactggatgagtcaggcattgtctacatcggtgctgaagtgaccggtggt
gacattctggttggtaaggtcacgccgaaaggtgagacccagctgacgccagaagagaaa
ctgctgcgcgctatcttcggtgaaaaagcctctgacgtgaaagattcgtcactgcgcgta
ccgaatggcgtgtcaggcaccgtgattgacgttcaggtctttacccgcgatggcgtggaa
aaagacaaacgtgcgctggaaattgaagagatgcagctgaagcaggccaaaaaagacctg
tctgaagaactgcagattctggaagcgggcctgttcagccgtattcagaacgtcctgatt
tctggtggcgttgaagcagacaaactggacaagctgccgcgcgagcgctggctggaactg
ggtctgactgacgaagccaagcaaaaccagctggagcagctggcagagcagtacgacgaa
ctgaagcacgagtttgagaaaaaactcgaaggtaagcgtcgtaaaatcacccagggcgat
gatctggcaccaggcgtgctgaaaatcgttaaggtttatctggctgttaagcgtcagatt
cagccgggtgacaaaatggcaggccgtcacggtaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggttgacatcgttctgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagattctggaaacccacctgggcatggca
gcgaaaggcatcggcgaaaagatcaacgccatgctgaagaagcaggaagaagtcgcgaaa
ctgcgcgaattcatccagcgcgcctatgacctgggtagcgatctgcgtcagaaagttgac
ctgaacaccttctccgatgacgaagttcttcgtctggcggagaacctgaagaaaggtatg
ccaatcgccactccggtgtttgatggcgcgaaagagagtgaaatcaaagagctgctgcag
ctcggcggcttgccttcttccggtcagattaccctgtttgacggccgtaccggtgagcag
ttcgaacgtcaggtaaccgttggctacatgtacatgctgaaactcaaccacctggttgat
gacaagatgcatgcacgttcaaccggttcctacagcctggttactcagcagccgctgggt
ggtaaggcacagttcggtggtcagcgctttggtgagatggaagtatgggcactggaagca
tacggtgccgcgtataccctgcaggaaatgcttaccgttaagtctgatgacgtcaacggc
cgtaccaagatgtataaaaacatcgttgacggtaaccatcagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagagattcgctcgctgggtatcaacatcgagctggaa
gacgagtaa
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