Pseudomonas fakonensis: KSS94_02570
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Entry
KSS94_02570 CDS
T07698
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pfak
Pseudomonas fakonensis
Pathway
pfak03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfak00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KSS94_02570 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfak03021
]
KSS94_02570 (rpoB)
03400 DNA repair and recombination proteins [BR:
pfak03400
]
KSS94_02570 (rpoB)
Enzymes [BR:
pfak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KSS94_02570 (rpoB)
Transcription machinery [BR:
pfak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KSS94_02570 (rpoB)
DNA repair and recombination proteins [BR:
pfak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KSS94_02570 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QXH52042
UniProt:
A0ABX8N6X4
LinkDB
All DBs
Position
586017..590090
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK
LSLELVPQRLRGEVAVMDIHDGSGKVIVEQGRRITARHINQLEKAGVKELDVPMEYVLGR
TSAKAIVHPATGEILAECNTELTTDLLIKIAKAQVVRIETLYTNDIDCGPFISDTLKIDT
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVSDDIVFLSAIEEADHVIAQASAAMNEKKQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
KVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVISDDVLNGLEHGQWFKLRMA
EDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKIDRMIEEQRKAAEIRGFLTEIYNEIGGRQENLEEFTDAEILALAHNLKKGVPMATP
VFDGAKEREIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggacgtgccttacctcctggcaatccagctggattcgtatcgcgaattcctgcag
gcgggagcatccaaggaccagttccgcgacgtcggcctgcatgcggccttcaaatcggta
ttcccgatcatcagctactccggcaatgctgccctggagtacgtcggctatcgcctgggc
gagccggctttcgatgtgaaggaatgtgtcctgcgcggtgtgacctttgcggtcccgctg
cgggtgaaggtgcgcctgatcatcttcgacaaggaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gttatcaacggtaccgagcgtgtgatcgtgtcccagttgcaccgttcgccaggtgtgttc
ttcgaccacgaccgtggcaagacccacagctccggcaagctgctgtactccgcacgcatc
atcccttaccgcggttcgtggctggacttcgagttcgacccgaaagactgcgtgttcgtc
cgtatcgaccgtcgccgcaagctgccggcctcggtgctgctgcgtgccctgggttacagc
actgaagaagtgctcaacaccttctacaccaccaacgtcttccacatctccggcgagaaa
ctcagcctggagctggtgccgcagcgtctgcgtggtgaagtcgcggtcatggacatccat
gatggcagcggcaaggtcatcgtcgagcaaggccgccgtattaccgcgcgccacatcaac
cagctggaaaaagctggcgtgaaagagctggacgtgccgatggagtacgtactgggtcgc
accagtgccaaggccatcgtgcacccggctaccggcgagatcctggccgagtgcaatacc
gagctgaccaccgatctgctgatcaagatcgccaaggctcaggtcgttcgcatcgagacc
ctgtacaccaacgacatcgactgcggtccgttcatctcggacactctgaagatcgacacc
accagcaaccagctggaagccctggtcgagatctaccgcatgatgcgtccaggcgagccg
ccaaccaaggacgccgccgagaccctgttcaacaacctgttcttcagcgccgagcgttac
gacctgtccgccgttggccgcatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgagcaaggaagatatcgtcgaggtcctcaagaccctggtcgacatc
cgtaacggcaaaggcatcgtcgacgacatcgaccacctgggtaaccgtcgcgttcgttgc
gtcggtgaaatggccgagaaccagttccgcgttggcctggtacgtgtagagcgtgcggtc
aaagagcgtctgtcgatggccgaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggttgcggcggcggtgaaagagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgtgtttctgcactcggccct
ggcggtctgacccgtgagcgcgcaggcttcgaagtccgtgacgtacacccgacccactac
ggccgtgtgtgcccgatcgaaacgccggaaggcccgaacatcggtctgatcaactccctg
gcagcttatgcccgcaccaaccagtacggcttcctcgaaagcccgtaccgcgtggtgaaa
gagggtgtggtcagcgacgacatcgtgttcctgtcggccatcgaagaagctgatcacgtc
atcgcccaggcctcggccgcgatgaacgagaagaagcagctgatcgacgagctggtagcc
gttcgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaagcaggttgtttccgtcgctgcctcgttgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtaccgaccctgcgcgcc
gacaagccgctggtaggtaccggcatggagcgcaacgtcgcccgtgactccggtgtctgc
gtggttgctcgccgcggtggtgtgatcgactcggtcgacgccagccgtatcgtcgttcgc
gtcaatgacgacgaagtcgagaccggtgaagcaggtgtggatatctacaacctgaccaag
tacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgac
aaggttcagcgcagcgacatcatggccgatggtccgtccaccgacatgggtgagctggca
ctgggtcagaacatgcgcatcgcgttcatggcgtggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagaccgcttcaccacgatccacatccaggaa
ctgacctgtgtggcccgtgacaccaagcttggcccagaagaaatcaccgcagacatcccg
aacgtgggtgaagctgcgctgaacaagctggacgaagccggtatcgtctacgtaggtgcc
gaagtcggcgccggcgacatcctggtcggcaaggtcaccccgaaaggcgagacccagctg
actccggaagaaaaactgctgcgcgcgatcttcggcgagaaggccagcgacgtcaaagac
acctccctgcgcgtaccgaccggtaccaagggcaccgtcatcgacgtacaggtcttcacc
cgtgatggcgtcgagcgcgacagccgcgccctggccatcgagaagatgcagctcgacgag
atccgcaaggacctcaacgaagagttccgcatcgtcgaaggtgcaaccttcgagcgtctg
cgttcggctctgaacggccaggtggttgacggtggtgcgggcctgaagaaaggcaccgtg
atcagcgacgacgtcctgaacggcctggagcacggccagtggttcaaactgcgcatggcc
gaagatgcactgaacgagcagctggaaaaggctcagcagtacatcgtcgatcgccgtcgc
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggca
ccgggcgtactgaagatcgtcaaggtctacctggccatccgccgtcgcatccagccgggt
gacaagatggccggtcgtcacggtaacaagggtgtcgtctcggtaatcatgccggtcgaa
gacatgccgcacgacgccaacggtactccggtcgacgtcgtactgaacccgctgggcgta
ccttcgcgtatgaacgtcgggcagatcctcgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcgaccgcatgatcgaagagcagcgtaaagccgctgaaattcgtggc
ttcctcaccgagatctacaacgagatcggtggtcgtcaggagaacctggaagagttcacc
gacgcagagatcctcgccttggcccacaacctgaagaaaggcgtgcctatggccactcca
gtcttcgacggtgccaaagagcgtgagatcaaggccatgctgaaactggcagacctgcca
gaaagcggccagatgcagctgttcgacggccgcaccggcaacaagttcgagcgtcctgtg
accgttggttacatgtacatgctcaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcatacggcgcggcatac
accctgcaagaaatgctcacagtgaagtcggacgacgtgaacggccgtaccaagatgtac
aagaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgttcgctcggtatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
