KEGG   Pseudomonas ogarae F113: PSF113_2163
Entry
PSF113_2163       CDS       T01734                                 
Symbol
ycfD
Name
(GenBank) YcfD
  KO
K18850  50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
Organism
pfe  Pseudomonas ogarae F113
Brite
KEGG Orthology (KO) [BR:pfe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pfe03009]
    PSF113_2163 (ycfD)
Enzymes [BR:pfe01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.47  [50S ribosomal protein L16]-arginine 3-hydroxylase
     PSF113_2163 (ycfD)
Ribosome biogenesis [BR:pfe03009]
 Prokaryotic type
  ribosomal protein modification factors
   PSF113_2163 (ycfD)
SSDB
Motif
Pfam: JmjC_2 WHD_ROXA AraC_binding Cupin_1 Asp_Arg_Hydrox
Other DBs
NCBI-ProteinID: AEV62174
UniProt: A0ABM6QXN5
LinkDB
Position
complement(2534723..2535889)
AA seq 388 aa
MNPDIPLQLLGGITAREFLRDYWQKKPLLIRQAIPDFQNPIDADELAGLALEEEVESRLV
IEHGERPWELRRGPFAEDEFSKLPEREWTLLVQAVDQFVPEVSELLENFRFLPSWRIDDV
MISFAAPGGSVGPHFDNYDVFLLQGHGQRNWKIGQMCDSESPLLQHADLRILAEFEATDE
WTLEPGDMLYLPPRLAHCGVAVDDCMTYSVGFRAPSAAEVLTHFTDFLSQFLPDEERYTD
ADARPVADPHQIQQDALDRLKGLLAEHMSDERLLLTWFGQFMTEPRYPELVVGPELEEDD
LLASLEQGAVIIRNPSARLAWSEVDDDLLLFASGQSRYLPGKLRELLKMICAADALHIEN
LGPWLADEDGRGLVCELVKQGSLGFADE
NT seq 1167 nt   +upstreamnt  +downstreamnt
atgaatcctgatattcctctgcaacttctgggcggcatcacggcacgggagttcctgcgt
gactactggcagaaaaagcccctgctgatccgtcaggcgattcctgacttccagaacccg
atcgatgccgacgaactggccggtctggccttggaagaagaagtcgaatcgcgcctggtg
atcgaacacggcgagcgcccttgggaattgcgtcgcggcccgttcgccgaagacgaattc
agcaagctgccagagcgcgagtggaccctgctggtacaggcggtcgatcagttcgtaccg
gaagtcagcgagctgctggagaacttccgcttcctgccgagctggcgcatcgacgatgtg
atgatcagcttcgccgccccaggtggcagcgtgggcccgcatttcgataactacgacgtg
ttcctgctgcagggccatggccagcgcaactggaaaatcggccagatgtgcgactccgaa
agcccgctgctgcagcacgccgacctgcgcatcctcgctgaattcgaagccactgacgag
tggaccctggaaccgggcgacatgctctacctgccgccgcgcctggcgcactgtggcgtg
gccgtggacgactgcatgacctactcggtgggtttccgtgcgccgagcgccgctgaagtc
ctgacccacttcaccgacttcctcagccagttcctgccggacgaagagcgctacaccgac
gccgacgcgcgccctgtagccgacccgcaccagatccagcaggacgccctcgaccgcctc
aagggcttgctggccgagcacatgagcgacgagcgcctgctgctgacctggttcggccag
ttcatgaccgagccgcgctacccggaactggtggtgggcccggaactggaagaagacgac
ctgctggccagcctggaacaaggtgccgtgatcattcgcaacccgagcgcgcgcttggcc
tggtcggaagtcgatgacgacctgctgctgttcgccagcggccagagccgttacctgccg
ggcaagctgcgcgagttgctgaaaatgatctgcgccgccgacgccctgcacatcgagaac
ctcggtccgtggctggccgacgaagacggtcgcggcctggtctgcgaactggtcaagcaa
ggcagcctggggttcgccgatgaataa

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