Pandoraea faecigallinarum: AB870_14360
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Entry
AB870_14360 CDS
T03972
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
pfg
Pandoraea faecigallinarum
Pathway
pfg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB870_14360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfg03400
]
AB870_14360
DNA repair and recombination proteins [BR:
pfg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB870_14360
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AB870_14360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
AAA_23
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_21
nSTAND3
AAA_22
AAA_25
BCA_ABC_TP_C
Viral_helicase1
cobW
Motif
Other DBs
NCBI-ProteinID:
AKM31047
UniProt:
A0A0H3WTH1
LinkDB
All DBs
Position
complement(622181..625045)
Genome browser
AA seq
954 aa
AA seq
DB search
METIRIRGARTHNLKNVNLDLPRHQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYC
PDHGLPLESQSVSQMVDAVLALPEDTKLMILAPIVVDRKGEHADLFESMQAQGFVRFRIR
SGGGAANEGTARVYDIEALPKLKKTEKHSIDVVIDRVKVRADLKQRLAESFETALRLADG
RAVALEMDTDKEYVFSSKFACPVCSYSLQELEPRLFSFNNPMGACPTCDGLGQMTFFDPK
RVVAFPALSLASGAIKGWDRRNQFYFQMLQSLAAFYDFDVDTPFEELAEDTQKIVLYGSG
EQEIPFTYVNEKGRTSVRSHAFEGIIPNLERRYRETDSVAVREELAKYQNNRACPDCEGS
RLRREARFVKVGEDKQARAIYEIGNLPLREALGYFHELVLHGSKREIADKIVKEIVARLT
FLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLI
GTLKHLRDLGNSVIVVEHDEDMILASDYVVDMGLGAGIHGGTVIAQGSPEQIEKSAQSLT
GQYLSGARRIEVPAERRAPGEDYLRIVDATGNNLRHVNLDLPVGLLTCVTGVSGSGKSTL
INDTLYHAVARHLYGSSAEPAPYEQIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTP
IRELFAGVPTAKERGYDPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCHGKR
YNRETLEVQYKGRNISEVLDMTVEQAHEFFKPVPVVARKLKTLLDVGLGYIRLGQSATTL
SGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIELLLTVIHRLRDQGNTVVIIEH
NLDVIKTADWVIDLGPEGGAGGGQIIAQGTPEQVAASKASFTGKYLAPLLTRGK
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccatccgtattcgtggggctcgcacccacaacctcaagaacgtcaatctcgac
ttgccacgccaccagctcgtggtgatcaccggcctgtcgggttccggcaagtcgtcgctc
gctttcgacacgctttacgcggaaggtcaacgccggtacgtcgaaagcctgtcggcgtac
gcccgtcagttcctgcaactgatggaaaagcccgacgtcgatctgatcgaaggcctgtcg
ccggcgatctccatcgagcaaaaggcgacgtcgcacaacccgcgctccaccgtcggcaca
gtcactgaaattcacgattacctgcggctgctctacgcacgcgtgggcaccccctactgc
cccgatcacggcctgccgctcgaatcgcaaagcgtctcgcaaatggtcgacgccgtgctc
gcgttgcccgaagacaccaagctcatgatccttgcgccgatcgtcgtcgaccgcaagggc
gagcatgcggacctcttcgagtcgatgcaggcgcagggcttcgtacgctttcgcatccgc
tcggggggcggcgccgccaacgaaggcacggcgcgcgtgtacgacatcgaggccctgccc
aagctcaagaagacggagaagcactccattgacgtggtcatcgatcgcgtgaaggtgcgc
gccgatctcaagcaacgtctggccgaatcgttcgagacagcgctgcggctggccgacggc
cgcgccgtcgcgctcgaaatggacaccgacaaggaatacgtgttcagctcgaaattcgct
tgcccggtgtgctcgtattcgttacaagaactcgaaccccgcctgttctcgttcaacaac
ccgatgggggcgtgcccgacgtgcgacgggctgggtcagatgacgttcttcgatccgaag
cgcgtggtcgcgtttccggcgctctcgcttgcgtccggcgcgatcaagggctgggaccgg
cgcaatcagttttacttccagatgctgcaaagccttgcggcgttctacgacttcgacgtc
gataccccgttcgaagaactcgccgaagacacccagaagatcgtgctgtacggctcgggc
gagcaggagattccgttcacgtacgtcaacgagaaaggccgcacgtcggtgcgctcgcac
gcgttcgaaggcatcatcccgaatctggagcggcgctatcgcgaaaccgattcggtcgcg
gtgcgcgaggaactcgccaagtatcagaacaatcgggcgtgccccgattgcgagggcagc
cgtctgcgccgcgaagcgcgtttcgtcaaggtgggcgaggacaagcaggcccgtgccatc
tacgagatcggaaacctgcccctgcgcgaggcacttggctatttccacgaactggtgctg
cacggatcgaagcgcgagatcgccgacaagatcgtgaaggaaatcgtggcgcgcctgacg
ttcctgaataacgtcggcctcgactacctctcgctggagcgcagcgccgacaccctctcg
ggcggcgaagcgcagcgcatccgtctggcgtcgcagatcggctcgggtctcacgggggtg
atgtacgtgctcgacgagccgtccatcggtctgcaccagcgcgataacgatcgcctgatc
ggcacgctcaagcatctgcgcgacctcggcaactccgtgatcgtggtcgagcatgacgaa
gacatgattctcgcgagcgactacgtcgtcgacatggggcttggcgcgggcattcacggc
gggacggtgattgcacagggcagtccggaacagatcgagaagtcggcgcaatcgttgacc
ggccaatacctctcgggcgcgcgccgcatcgaagtccctgccgagcgtcgtgcgccgggc
gaggactatctgcgcatcgtcgatgccacgggcaacaacctcaggcacgtcaatctggac
ctgccggtcggtctgctcacgtgcgtgacgggcgtctccggctcgggcaagtcgaccctc
atcaacgatacgctgtatcacgccgtggcgcgccatctgtacggctcgtcggccgaaccg
gcaccgtacgaacagatcgacgggctggagcacttcgacaaggtcatcaacgtcgaccag
tcgcctatcggtcgcacgccgcgctcgaatcccgccacctatacgggactgttcaccccg
attcgcgaactgttcgcgggcgtgccgacagccaaggaacgtggttacgatccgggccgt
ttctcgttcaacgtgaagggcggacgctgcgaagcctgtcagggcgatggcgtcatcaag
gtcgagatgcacttccttccggacgtgtatgtgccgtgcgacgtttgccacggcaagcgt
tacaaccgcgagacgctggaagtccaatacaagggacgcaacatctcggaagtgctcgac
atgacggtcgagcaggcgcatgagttcttcaagcccgtgccggtcgtggcgcgcaagctc
aagacactgctcgatgtcggcctcggttatatccgtctcggccagtcggccaccaccctc
tcgggcggcgaggcacagcgcgtgaagttgtcgctggaactgtccaagcgcgataccggc
agaacgttgtatatccttgacgaaccgaccaccggcctgcatttccacgacattgaattg
ctgctcacggtgattcaccggttgcgcgatcagggcaacaccgtggttatcatcgaacac
aatctcgacgtgatcaaaacggcggattgggtgatcgatctcgggccggaaggcggtgcg
ggcggcgggcagatcattgcacagggcacgcccgagcaggtcgccgcgagcaaggccagc
ttcaccggcaagtatctcgcgccgctgctcacgcgcgggaagtaa
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