Pseudocercospora fijiensis: MYCFIDRAFT_46219
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Entry
MYCFIDRAFT_46219 CDS
T03109
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pfj
Pseudocercospora fijiensis
Pathway
pfj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYCFIDRAFT_46219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfj03019
]
MYCFIDRAFT_46219
Messenger RNA biogenesis [BR:
pfj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MYCFIDRAFT_46219
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
MYCFIDRAFT_46219
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_HEAT
CNOT1_TTP_bind
ARM_Cnot1
Motif
Other DBs
NCBI-GeneID:
19339689
NCBI-ProteinID:
XP_007919989
JGI:
46219
UniProt:
N1QBM1
LinkDB
All DBs
Position
Unknown
AA seq
2118 aa
AA seq
DB search
GSPVSSTAPHTASSSGQLSSLVLTQLNILLSTINHDTDQAKWEAQAEKIRKLIDESGMEL
FTTYFRRLLQSNVGTIFTPTARAPTGAEAAGNYQLLLEEMHKILKDPQQADKIAQSLDTT
ETELYRDFDLNAFVDHFPLDPLAKVALVLPCRAVNKMDLRAKADAILSQTFQSFLSTLAT
PQPTDPDNELSPSVLAAIVDRLLQEPPRNWGEEQRENLFYAIRVRYSRLNTRDSRLAKRI
QQAGPRVTSSLDACKDILSGVETRDISYPQIANVLLFMVITQNGDAYDPGIFIEAVRQHK
AGARLDWTDVVSGFDKEHLRVTKKQFLALYNALVPLANEYANFDIQSLWGPGPGGQPWQY
PETQLSFVVAFLSTTPEELDVMTIPNLQQAFDLRQFATASEKVKAYAEQAIKHPLVSMQA
TRTLFEMIFRTQESYNMAQVLGIPENIINRNMTVFVCAASAVPKPWQPLQEQALKQLFYP
FLLKQHDNYEFVMHALWQHDKSWVATRMVEFYNQDQNLLILIYQHADEHGWLEQLFTLTT
VFAVDLATYAHGKGKCDLEEWAQQHVAQLGPIPFARAVAEFLNTKIEDESQIQRDHAPPK
TVPMKAKTVHALLSLIQDAMPPEYELGGLFRRCLQSYPRLFNYGQDEKLDAIIEANGEQS
NVLSDSATKDMEEKYKEMYGGQTNPDTLVNDLNRLKVSEEPADQELFAAMLFGLFEEYNC
FGEYPNEALATTAVLFGGLVSYHVLSGVAEQAAIFMIFEAVTEYGPEDPMYRFGLQALLH
VLPRLKEWPHLADRILQTPSLRGTPAVPAAENVLKELHESNAALSGEVANGITNGIVEEE
FGEVAAPTFSAIQVDPPLRENFYEDPDEDVSDKIMFVLNNVSKRNLDEKFKEIEGAVEEK
YHQWFAHYLVEELAKSQPNFQSLYLQILDNFNQKMLWAEVLRETYMSCQKMLNAQSTMDN
PQERTTMKNLAGWLGSITLARNQPILHRNLSFKDLLLEGQDNGRLLVAIPFTCKTLVQAA
QSKVFRPPNPWIAELLGLLSELYHCMDLKLNMKFEIEMLCREFGLDIKSIDPLDTIRSRP
VIDQGMLQNYLPDGPDAFGDMALMGLAKRGPNERFSPEAVISAVPDLGNLLQIPQPVGSI
TQQQMRNIFVNASQQAIYEIIAPVVERSVTIASISTAELIQKDFITEGDVDKMRNSAHTV
VKALSGSLALVTCKEPLRMSITNNIRIMASRGLPDQLPEGQILMFVNDNIDIVCSLVEQA
AENHSLNEIDLQLQRALDERRQHAQERPDEPFAQTPVSRWATLIPDPYRQDQNGLNRQQL
SIYEEFGRQARIPAQAHGNQGSQDGQGRPAQDVLSDIYMPQLTPAETPAMPRNTQNHRLQ
GHGAQQVNGFIDPATVIPRVFEVIQEIQQATREATEDHAGELSDSSPVRHLYSQILGFLD
AVQQYELYVPVLADRVLNIIFTESSKKLETEILARLLQTFQRAHNPVSRQVITAIINTES
DIIFNASAITALSSLELLEPLHIDAFMSKAFKQRRMVALACFRDVLDEMLLRESALALRA
EMVLSYEALGQWLVEEPHNDLAREVVSKLQRPANQVNGMPSPESETSKGNLQEYIFEEWV
SLQRRGVPVRSHLAFVQQLHEKNIITGPEDALGFVRHSLEYSIMQFNAESGIPYASQDKA
YVAIDAFARLIMLIVMYQAPSSGEPINKPKSLEAMIRLIVLVMADHHNKQREHWNGRVYF
RLFSSLLVELNDHREQLTAEQNQDAFKVFATTLQVLQPRYFSGFLYHWLALLSHRLLVPA
FISPAGRANGGWNTYVKLLTVLFDNLGELLLVPEVSPVSVDFYRGIFRFMISIEHDFPEF
LVENHMQLNASIPLQCLQLRNIINNACPRALAVDQPDPFTSGLKINRLEQVRQAPTVHCD
TSKVLDEATIKPIVDKVIAMLELSDEEFEAVLAVVDREDGHISSILINALVLHIGIHATS
ASSVFSSAAPPAKLLERLIKESRAEARYHILSAMANQVRFVNSHTHYFSTALQHIFGTSG
QEVQEQILRILCERVLVPRPHPWGIIVMLLEMMKNPNYGLWDLPWIKASPSIESLLVNLA
QGQEQRAQFGGRSPLAGF
NT seq
6357 nt
NT seq
+upstream
nt +downstream
nt
ggctcacccgtctcgtccactgcaccgcacaccgcgagctcgtcgggccagctcagcagt
ctggtgctcacgcagttgaatattttgctgagcaccatcaatcacgacactgaccaggcc
aagtgggaagcacaggcggagaagatcagaaaactgatcgatgagagcggcatggagcta
ttcaccacatatttccgcagactgctccagagcaatgtcggcaccatcttcacgcccaca
gcacgtgcgccgacgggcgctgaggccgctggaaactatcaattgctgctggaggagatg
cacaagattctcaaagatccgcagcaagcagacaagatcgcccagtcgctagacaccacc
gagaccgagctctaccgcgacttcgacctcaatgcatttgtcgaccattttccgctagac
ccgctagcaaaagttgcattggtccttccgtgtcgcgccgtcaacaagatggacctgcga
gcaaaagccgacgccatcctctcccagaccttccaaagcttcctttccacactcgcgacc
ccacaacccaccgaccccgacaacgagctgtcgccatccgtgcttgccgccatcgtcgac
cgactgcttcaggaaccaccacgaaactggggtgaagagcagcgcgaaaacctcttctat
gctatacgcgtgagatatagcaggctcaatacgagagactcgcgtctggccaagcgcata
caacaagcgggcccgcgcgtgacctccagcctagacgcctgcaaagacatcttaagcgga
gtagagacacgcgacatctcatatcctcagatcgcgaatgtgctactcttcatggtcatc
actcaaaatggcgacgcatacgacccgggcatcttcatcgaggccgtgcggcaacataag
gcaggcgcacgcttggactggacagatgtggtatcgggcttcgacaaggagcatctgagg
gtgacgaaaaagcagttcttggctctctacaatgcattggtgcccttggcaaatgagtac
gccaatttcgatatccagagcctgtggggaccaggaccaggtggtcagccgtggcagtat
ccggagacacaactgagctttgtggttgcgttcttgtccacgacgcctgaggagttggac
gtgatgaccataccgaatcttcagcaggcatttgacctgagacagtttgcgactgcgtca
gagaaggtgaaggcgtacgcggagcaggccatcaagcatccgctcgtctccatgcaagcc
actcgaactctgtttgagatgatcttcaggacgcaggagagctacaatatggcccaggtg
cttggcattcccgagaacatcatcaaccgaaacatgacagtgttcgtctgcgctgcgtcc
gcagtgccgaaaccctggcaaccactgcaggagcaagccctcaaacagctgttctacccg
ttcctcctcaaacaacatgacaactacgagtttgtcatgcatgcattatggcagcacgac
aagtcgtgggttgcaacgaggatggtcgagttctacaaccaggaccagaatctcctgata
ctaatctatcaacatgcggatgagcatggctggctagagcagctcttcaccctcacgact
gtctttgctgtcgatttagccacctacgcccacggtaaaggaaagtgtgacttggaagaa
tgggcgcaacagcatgtcgctcagctcggaccaatcccattcgccagagctgtagccgaa
ttcctgaacacgaagatcgaggatgagtctcaaatccagcgcgaccacgcaccgcccaaa
acggtgccgatgaaggcgaaaacggtacatgccctgctctcgctcatccaggatgcaatg
ccacccgagtacgagctcggtggccttttccgaagatgcctgcaaagctacccgcgcttg
ttcaattatggccaggacgaaaagctggatgccattatcgaggctaacggcgaacagagc
aatgtgctttcggactctgccaccaaagacatggaagaaaagtacaaggaaatgtatggt
ggccagactaacccagacacgctcgtcaacgacctcaatcgtctcaaggtctcggaagag
cccgccgaccaagagctgtttgcagcaatgctattcggcctgtttgaagagtataattgc
tttggtgagtatccaaacgaggcactcgcaaccacggccgtgctattcggtggactggta
tcctaccatgttctctcgggcgtagcagagcaagctgcaatcttcatgatcttcgaggcc
gtcacggagtacggtcccgaagaccctatgtatcgtttcggattgcaagcactcctgcat
gttcttcccagactcaaggagtggccacacctggcggacaggattctgcagaccccaagt
ctcagaggaacaccagcagtaccagcagccgaaaatgtcctcaaagagttgcacgagtca
aatgccgcacttagcggggaggtcgcgaatgggatcaccaatggaatcgtcgaggaagaa
tttggcgaggtcgctgcacctacgttcagcgctatccaagtcgatcctcctctgcgcgaa
aacttctacgaagatcctgatgaggacgtctcggacaagatcatgttcgtcctgaacaac
gtctctaagagaaacctcgacgagaagttcaaggagattgaaggcgcggtggaagagaag
taccatcaatggttcgcccattatctggttgaggagctggccaagtcgcagccaaatttc
cagagtctctatctgcagatcttggacaatttcaatcagaagatgctgtgggccgaagta
ttgcgggagacttacatgagctgtcagaagatgctcaacgcgcagtcgacaatggacaat
cctcaggagcgaactacgatgaagaatctggctggctggcttggctccattacccttgca
cgcaatcagccgatccttcatcgcaatctatctttcaaggatctgcttttggaaggccaa
gacaatggacgtctgctggtcgcgatcccgttcacatgcaagaccttggtccaagcagct
caatccaaggtgttccgaccgcccaatccatggatcgctgagttgctcggcttgctgagt
gagttatatcactgcatggacctcaagctcaacatgaagtttgagatcgagatgctgtgt
agagaattcggtctcgatatcaaatcgattgatccgctggatactattcgctcgcggcct
gtcattgaccaaggaatgctccagaactatctccccgatggtcctgatgcgtttggtgac
atggcgttgatggggctcgccaagcgtggtccgaacgagcgcttttcgccagaagctgtc
atctctgctgtgccggatctcggaaatctgctacagattcctcagccagtcggttccatc
actcagcagcagatgcgtaacatcttcgtcaacgcctctcagcaagcaatctacgagatc
atcgccccggtcgttgagcgctccgtaaccattgcaagcatcagcactgcagagttgatc
cagaaggacttcattacagaaggcgatgtcgacaagatgcgcaactcggcccacaccgtc
gtgaaggccctctctggtagtctggccttggtcacttgcaaggagcctctgcgcatgagc
attaccaacaacattcgcatcatggcttctcgaggtctccctgatcagctccccgagggc
cagatcttgatgttcgtcaacgacaacattgacatagtatgcagtctggttgaacaagcg
gcagagaaccattcattgaacgagattgatctccagcttcagcgggcattagacgaacgc
cgccaacacgcccaggagagaccagacgagccctttgcgcagacacctgtcagccgctgg
gcaactcttatcccagatccgtatcgccaagaccagaatggcctcaatcgccaacagctt
tcgatctacgaagagtttggtcgacaagcacgcattccggcgcaggcccatggcaaccaa
ggctcgcaagatggtcaaggacgccccgcacaggacgtactttctgacatctacatgcca
cagctcactccagctgagacgccggcgatgcctcgcaacacgcagaatcatcgcttgcaa
ggacacggagcgcagcaggtcaatggctttatcgatccagcaactgtcatcccacgcgtc
tttgaagtgattcaggagatccagcaagcgactcgggaggccacggaggaccacgctggt
gagctgagcgactccagccccgtccgtcatctgtacagccagattcttggattcttggat
gcggtccagcagtatgagctttacgtcccggtcctggctgatcgcgtgctcaacatcatc
ttcaccgaatcctcaaagaagctggaaacagaaatcctcgccagactcctacagacattt
cagcgggctcataatcccgtcagtcgccaagtcatcaccgccatcattaatactgagagc
gatatcatttttaatgcgtctgcgatcaccgcgcttagctcgctggagttgctcgagcct
ctacacattgatgccttcatgtccaaggcgttcaagcagcgccgaatggtcgcgctcgcg
tgtttccgcgacgtcttggatgagatgctgttgagagaaagcgcgctggcactgcgcgct
gagatggtgttatcatacgaagcgctcggccagtggctcgtagaagagccccacaatgat
cttgctcgcgaagtcgtttcgaagctgcagcgacctgccaaccaagtcaatggtatgccc
agtccagaatcggagacgagcaaaggaaacttgcaagaatacattttcgaggagtgggtg
tcgctgcagcgaagaggcgtgcctgtgcgatctcacctggcatttgttcaacaattgcac
gagaagaacatcatcactggaccagaagacgcattaggattcgttcgacacagcctcgag
tactcgatcatgcagttcaatgccgagagcggcattccatatgcatctcaggacaaggca
tacgtcgctattgatgcattcgccaggctgataatgctcatcgtcatgtatcaagcgcca
tctagcggcgaaccaattaacaagccaaagtctttggaggccatgatccgcctgatcgtt
ctggttatggccgaccaccacaacaagcagcgcgagcactggaatggaagagtctacttc
aggctcttctcaagtctgctcgtcgagttgaatgaccatcgcgagcagctcacagcagag
cagaaccaagatgctttcaaagtgttcgcgactaccttgcaggtgcttcagccacgatat
ttctctggcttcctctatcactggctcgcactgttgagccaccgcctcctggtcccagcc
ttcatcagtccagcgggtcgcgctaatggcggctggaacacctatgtgaagctgctgaca
gtcctcttcgacaacctcggtgagcttctcttggtaccagaggtttcgcctgtttccgtc
gacttctatcgcggcattttccgattcatgataagcattgagcacgacttcccagagttt
ctggtggagaatcacatgcagctcaatgcgagcatccctctacagtgcttgcagctacgc
aacatcatcaacaacgcctgtccacgcgctctcgcggtcgaccaaccagacccattcacc
agtggactcaagattaataggcttgaacaggttcggcaggcaccaaccgtgcactgcgac
accagcaaggtacttgatgaggccactatcaagcctatcgttgacaaggttatcgccatg
cttgagctgagcgatgaagaattcgaagctgtgctggctgtcgttgacagagaggacgga
cacatcagtagcatccttatcaatgctcttgtcctgcacatcggaattcacgctacatcc
gcatcgtcggtattctcctcggcggcacccccggctaagcttctcgaacgactcattaag
gagagccgtgcagaggcgcgctaccacattctttcagcgatggctaaccaagtccgcttc
gtcaactcgcatacgcactatttctcgactgctttgcagcacatctttggtacaagcggc
caggaagtgcaggagcagatcttgcgcattctgtgcgagcgcgtgctcgttccaagacca
catccatggggcattatagtaatgctgctcgagatgatgaagaaccccaactatggtctt
tgggatctaccatggattaaggcatcgccaagcatcgagagcctgctcgtcaatctcgct
cagggacaggagcagcgagcgcaattcggaggcagaagtccactcgctggattctaa
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integrated database retrieval system
