Pseudomonas frederiksbergensis: PFAS1_28250
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Entry
PFAS1_28250 CDS
T04786
Name
(GenBank) ornithine decarboxylase SpeF
KO
K01581
ornithine decarboxylase [EC:
4.1.1.17
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk00330
Arginine and proline metabolism
pfk00480
Glutathione metabolism
pfk01100
Metabolic pathways
pfk01110
Biosynthesis of secondary metabolites
pfk04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
PFAS1_28250
09106 Metabolism of other amino acids
00480 Glutathione metabolism
PFAS1_28250
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
PFAS1_28250
Enzymes [BR:
pfk01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.17 ornithine decarboxylase
PFAS1_28250
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Gene cluster
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
APV43008
UniProt:
A0A1P8F3J8
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All DBs
Position
6058491..6060686
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AA seq
731 aa
AA seq
DB search
MKAALKIAASDSAFECFQTSREVIPLNQTDYTDIAVAVFSVEDVMAGALDTLQRTGFDIP
IFLVASPGSGNRARDVYQHLQDVLLQVNGIFDPSRNNAEYHGNQLETAAKAYEDSLLPPF
FDALKHYTESANATFACPGHQGGQFFRKHPAGRQFFDFFGETLFRADMCNADVKLGDLLI
HEGPALLAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHQGA
LIQAGATPVYLETARNPYGFIGGIDAHCFEEGYLRELISEVAPDKARLPRPFRLAIIQLG
TYDGTVYNARQVVDRIGKLCDYILFDSAWVGYEQFIPMMKDCSPLLLDLHENDPGIFVTQ
SVHKQQAGFSQASQIHKKDRHIKGQARYCSHAQLNNAFMAQASTSPFYPLFASLDVNARI
HSGRSGLRLWEDCVKFGIDARKLILEACTMVRPFVPDTIDGRPWQDHPTEDIANDIRFFE
FHPKDRWHAFSGYADKQYFIDPCKLLFTTPGIDPVDGSYTDFGIHAGILANFLRENGIVP
EKCDLNSILFLLTPAEDWAKMTHLASQIARFERFISDDAPMSRVLPAIYAQHQERYRNYT
IRQLCQEMHDLYRTHDVQHLQKAMFRKEHFPKKAMNPQAAQFEFIRGNVELVALADAQGR
IAAEGALPYPPGVLCVVPGEIWGGAVLKYFLALEEGINSLPGFTPELQGVYLKQEGDRIR
AYGYVIKTLPH
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcagccctgaaaattgccgccagtgattccgcgttcgagtgtttccagacctcc
cgagaagtcattccactcaatcaaaccgactacaccgatatcgcggttgcggtgttctct
gtcgaggatgtgatggcgggcgccctggacaccttgcagcgaaccggtttcgatatcccc
attttcctcgttgcctcccccggttccggcaaccgcgcccgggacgtctaccagcacctg
caagatgttctgcttcaggtaaatggcatttttgacccctcgcgcaacaacgctgaatac
catggcaaccaattggagaccgcggcaaaagcctatgaagacagtctgctgccgccgttc
ttcgacgcgctcaagcactacaccgagtcagccaacgcgaccttcgcctgcccgggtcac
cagggcggccagttctttcgcaaacacccggcgggccggcagttcttcgacttcttcggc
gaaaccctgtttcgcgccgacatgtgcaacgccgacgtcaaactcggcgatttgctgatc
cacgaaggcccggcgcttctggcgcaaaaacacgccgcgaaagtgttcaacgccgacaag
acctacttcgtgctcaacggcacctcggcgtcgaacaaggtggtgaccaacgcattgctc
acgcctggcgatctggtgctgttcgaccgcaacaaccacaaatccaatcaccagggtgca
ttgatccaggctggggctacccctgtttatctggaaaccgcacgcaatccttatgggttc
atcggcgggatcgacgcccattgtttcgaagaaggctacctgcgcgaactcatcagcgaa
gtcgcaccggacaaggcccgactgccacggccgtttcgcctggcgatcattcagctgggc
acttatgacggcaccgtctacaacgcccggcaagtcgtcgatcgcatcggcaaactgtgc
gactacatcctgtttgactcggcgtgggtgggctacgaacagttcatcccgatgatgaag
gactgctcgccgctgctgctggacctgcatgaaaacgatcccggcatctttgtcacgcaa
tcggtgcacaaacagcaggcggggttttcccaggcctcgcagatccacaagaaagatcgg
cacatcaagggccaggcccgttattgcagccatgcgcagctgaataacgccttcatggcc
caagcctccaccagcccgttctacccgctgttcgcctcgctggatgtgaacgcgcgcatc
cattccggccgtagcggcctgcgcctgtgggaggactgcgtgaagttcggcatcgacgcg
cgcaagttgatcctggaagcgtgcaccatggttcgcccctttgtgccggacaccattgac
ggtcgcccctggcaggaccaccccaccgaagacatcgccaacgacatccgctttttcgag
ttccatccgaaggatcgctggcacgccttcagcggttacgccgacaagcaatacttcatc
gacccgtgcaagttgctgttcaccacgcccggcatcgacccggtcgatggcagttacacc
gacttcggtatccatgccggcatcctcgccaacttcctgcgcgagaatggcatcgttccg
gaaaagtgcgacctgaactcgattctgttcctgctcaccccggccgaagactgggcaaaa
atgacgcatctcgcctcacagatcgcgcgttttgaacgcttcatcagtgatgacgcgccg
atgagccgggtattgccggccatctatgcgcagcatcaggagcgctatcgcaactacacc
attcgccaactctgccaggagatgcacgacctctaccgcacccacgacgtgcagcatttg
cagaaggcaatgttccgcaaggaacacttcccgaaaaaggcgatgaacccgcaagcagcg
cagttcgaattcatccgtggcaacgtcgaactggtggcgctggctgacgcgcagggtcgc
atcgctgccgaaggtgcccttccctatccacccggcgtgctctgcgtggtgcccggggaa
atatggggcggcgcggtgctcaagtacttcctggcgctggaagaaggtatcaactcgctt
cctggcttcacgccggaactgcagggtgtgtacttgaaacaggaaggcgatcgcattcga
gcctatgggtacgtgatcaagacgctcccacattaa
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