Pseudoalteromonas maricaloris SCSIO 43202: CTT31_01630
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Entry
CTT31_01630 CDS
T08529
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pfli
Pseudoalteromonas maricaloris SCSIO 43202
Pathway
pfli03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfli00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CTT31_01630 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfli03021
]
CTT31_01630 (rpoB)
03400 DNA repair and recombination proteins [BR:
pfli03400
]
CTT31_01630 (rpoB)
Enzymes [BR:
pfli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CTT31_01630 (rpoB)
Transcription machinery [BR:
pfli03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CTT31_01630 (rpoB)
DNA repair and recombination proteins [BR:
pfli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CTT31_01630 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
USE67892
LinkDB
All DBs
Position
1:400223..404248
Genome browser
AA seq
1341 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLDIPFLLQMQLESFDKFIAPDADGDTGLEAAFRSVFPIK
SYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVLMDKDAPGTVKDIKEQE
VYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKSHSSGKVLYNARVIPYRG
SWLDFEFDVKDNLYVRIDRRRKLPASIILRALEFTSEEILALFFETTSFEVKDGKVLMEL
VPSRLRGETAAFDIKDANGDVLVEKGRRITARHIKSIEKQGIDTLEVPHEYIIGRVVAKN
YIDESTGEVIAEANTELSLELMAELVKAGHSKIDTLYINEVDSGAYMSETLRVDSTNNRL
EALVEIYRMMRPGEPPTKEAAEALFDNLFFSEERYDLSTVGRMKFNSRVGYDSDEGDGTL
SKEDIVSVMKVLIDIRNGKGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPYRKVVDGIVT
DDVDYLSAIEEGQFVIAQANTTLTDDNQFAEELIPCRFKGESTFMPSDSIQYMDVSPQQV
ISVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERTLAKDSGVTIVAKR
GGIVKYADASRIVVNVNEDERIQGEAGIDIYNLTKYTRSNQNTCINQKPTCMVGEPVVRG
DVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSENVVKEDRLTTIHIQELQCIA
RDTKLGPEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEVEDMQLREAKKDF
NEEFRILEGGILTHARNLLIKSGMSEEQLAGFNTEKLLTQSLADEEHQAELEQLAAQYDE
LKADYDKRFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMGLAARGIGERLEEMMKEQREIHE
LREFIKKAYEIGDCRQKVDIANFSDDEIRRLADNLKGGLPIATPAFDGAREAEIKDMLEL
GGYPRSGQVTLYDGRTGDAFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPE
SFNVLLKEIRSLGINIELEEI
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcttattctgaaaagaaacgtatccgtaaggattttggtaaacgtccacag
gttttggacatacctttcctactgcaaatgcagttggaatcgttcgataagttcattgcg
cctgatgccgatggcgatactggattggaagctgctttccgttctgtattccctatcaag
agctactcgggcaactctgaacttcaatacgtcagttatcgtattggcgagccagtattt
gacgttaaagaatgtcaaattcgcggtgtgacatattctgctccacttcgcgttaaacta
cgtcttgtgctaatggacaaagatgcacctggcacagtcaaagacataaaagagcaagaa
gtttacatgggcgaaatcccgctcatgacagacaccggtacttttgtaatcaatggtact
gagcgtgttatcgtttctcagctacaccgttcacctggtgtattctttgataacgaccgt
ggtaaatcacactcatctggtaaagtgttatataacgcacgtgtgatcccttaccgtggt
tcatggcttgactttgaattcgacgttaaagataacctttacgttcgtattgaccgtcgc
cgtaaactaccagcatctatcatcttacgtgcgctagagttcacttcagaagaaatcttg
gcactattctttgaaacgacaagtttcgaagtaaaagatggcaaagtgttgatggaactt
gtgccttcacgcctacgtggtgaaaccgctgcatttgatattaaagatgcaaacggtgac
gtattggttgaaaaaggccgtcgtattactgcacgccacattaagagcatcgaaaagcaa
ggcatcgacactcttgaagtaccgcatgagtacatcatcggtcgtgttgttgctaaaaac
tatatcgacgaatcaacaggcgaagtgattgcagaagcgaacactgaactatcactagag
cttatggctgaattggtgaaagcgggtcactcaaagatcgatacgctttacatcaacgaa
gtagacagcggtgcgtacatgtcagagacattacgtgttgattctactaataatcgccta
gaagcattggtagaaatctatcgcatgatgcgccctggtgagccaccaacaaaagaagct
gcagaagcgttatttgataacctattcttctctgaagagcgctacgacctttcaacggtt
ggtcgtatgaagttcaatagccgtgttggttatgattcagacgaaggtgacggtacgtta
tctaaagaagatatcgtgagcgtgatgaaggtattgatcgacatccgtaacggtaaaggc
gatgttgatgacatcgaccacttaggtaaccgtcgtatccgttctgtaggtgaaatggct
gaaaaccaattccgtgtaggccttgtacgtgttgagcgtgcagtacgtgagcgtctaagt
cttggtgacctagataacgttatgccacaggatttgatcaacgctaagccaatctctgca
gcagtaaaagaattctttggttcttcacagctttcacagtttatggaccagaacaacccg
ctttcagaagtaacgcacaagcgtcgtatttctgcattaggtccgggtggtctaactcgt
gagcgtgctggcttcgaagtacgtgacgtacacgtaacgcactacggtcgtgtttgtcct
atcgaaacgcctgaaggtccaaacatcggtctaatcaactcgctatctacttacgcgcgt
acaaacgactatggtttcttagagactccataccgcaaagtagtagacggtatcgttact
gacgatgttgattacctatcagcaattgaagaaggtcagttcgttatcgcacaggcgaat
acaacgctaactgatgataaccaatttgctgaagaattgattccatgtcgttttaaaggt
gaatcaacctttatgccaagcgacagcatccagtatatggacgtatctccacagcaggta
atctctgtggcggcagcgcttatcccattcctagaacacgatgacgcgaaccgcgcattg
atgggatcgaacatgcaacgtcaagctgtacctacactacgtgctgataagccgttagtt
ggtactggtattgagcgtacactagcgaaagactctggtgtaacaatcgttgctaagcgt
ggcggtatcgttaagtatgctgatgcaagccgtatcgttgttaacgttaatgaagatgag
cgcatccaaggtgaagcgggcatcgacatctataacttaactaagtacacacgttcaaac
caaaacacttgtatcaaccagaaaccaacttgtatggttggtgagccggtggtacgtggt
gacgtgcttgctgatggtccttcaacagacctaggtgacttagcacttggtcagaaccta
cgcgtagcgttcatgccttggaatggttacaacttcgaggattcaatcctactttcagag
aatgttgtaaaagaagatcgtctaacgactatccacattcaagagcttcagtgtattgct
cgtgatactaagcttggtccagaagaaatcactgcggatattccaaacgtaggtgagtct
gcactaggtaagcttgacgaatcaggcgttgtatatatcggtgctgaagtgaaaggcggc
gacatccttgtaggtaaagtaacgcctaaaggtgaaacgcagctaacacctgaagaaaag
ctactacgcgctatcttcggtgaaaaagcgtctgacgttaaagacagctcactacgtgta
cctaactctgtatctggtacggttatcgacgtacaagtgtttacgcgtgacggtgttgaa
aaagacaaacgtgcacttgaagttgaagatatgcagcttcgcgaagcgaagaaagacttc
aacgaagagttcagaatccttgaaggcggtatcctgactcacgctcgtaacctactgatt
aaatcaggtatgagcgaagagcagcttgctggctttaacactgagaagctactaacacaa
agccttgctgatgaagagcatcaagctgagcttgagcaactagctgcacagtatgacgag
cttaaagctgactacgataagcgtttcgaaaacaagcgtcgtaagatcactcaaggtgat
gacctagcacctggcgtacttaagattgttaaagtatacctagctgttaaacgtcgtatc
caacctggtgataagatggcgggtcgtcacggtaacaagggtgtaatctcaactatcgtt
cctgttgaagacatgccttacgatgataaaggtcgtactgtagatatcgtacttaacccg
ctgggtgtaccatctcgtatgaacatcggtcagatcctagaaactcacatgggtctagct
gctcgtggtatcggtgaacgtcttgaagaaatgatgaaagagcaacgtgaaattcacgag
ctacgcgaattcatcaagaaagcttacgaaatcggtgactgccgtcagaaagtagatatt
gctaacttctctgatgatgaaatccgtcgcttggcagataaccttaaaggtggtcttcca
atcgcaacaccagcatttgatggtgcacgtgaagctgaaatcaaagacatgctagagctt
ggtggttatccaagaagtggtcaggtaacgttatatgatggtcgtactggtgatgcattt
gagcgtcaagtaacagtaggctacatgtacatgctgaaactgaaccaccttgttgatgac
aagatgcacgcgcgttcaacaggttcttacagcctagttactcagcagccgctgggtggt
aaggcacagttcggtggtcagcgtttcggtgagatggaggtatgggcactagaagcatac
ggtgctgcctacacgctacaagaaatgttgacagtgaagtcggatgacgttaacggtcgt
actaagatgtataagaacatcgtagacggtaaccacaagatggaaccgggtatgcctgag
tcgttcaacgtactgttgaaagaaatccgctcgctaggtatcaacatcgagttggaagaa
atttaa
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