Ptychodera flava: 139147437
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Entry
139147437 CDS
T10724
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pfll Ptychodera flava
Pathway
pfll03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139147437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfll03019
]
139147437
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139147437
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
139147437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
139147437
NCBI-ProteinID:
XP_070574645
LinkDB
All DBs
Position
13:complement(12161736..12205691)
Genome browser
AA seq
2402 aa
AA seq
DB search
MNLDSLSLALSQISYSVANLTKKNYKSSVGEISSLVSRHGPEADRHLFRCLFSLVDFSGD
GKSSGKDFHQTQFLIQECSTLITKPNFISTLCYAIDNPLSHQKSIKSSTQLFTQLSRVLK
LTKVQEVVFGIALLHSSNPDTRSHAAQFVKQKLPDLLRSYIDSDISSNQEGGLNDIAIEV
LHLLLIHLLHGPKSQSGIGTDQKEAFLNTLRRDFPKHQVPVVLAPLLYSEKQDISMDRLI
TDVVNVPNAMMDGSLAELMLEIGYGCCATVEECRNTLVQFGTNSITPSSIARVLGMMAKT
HTGLTDQMALQSLTAPGGNIWSDGKDKTDQGNQNTTWNVTIFVEVVKDCAPHINWREVIF
ELDHTGFTVKDALALRLIKEAYIRGLQEVFPVEFLYRTWKNTDGQLSWIQQALANPDVFC
FSDYPCHTAVIDILKAPPDDDNREIATWKSLDLVETLLRLSETGKYDQVKALFGFPVKHC
PDVLLLALLQVQPLWNTLRHDLVSTLLPIFLGNHPNAAIVLHYAWHGQGQSPTIRKLVMH
AMAEWYMRGENFDQSRLSRILDVAQDLKALSLLLNGTPFAFVIDLACLASRREYLKLDKW
LSDKIREHGELFVQACVSFLKRRAPQVLGGLVDKPDMGPKAGQLPPETIGTMLACIQACV
GSVQQDLSETILTMVANSGGLLKARQPPPGVITKTSQPAAITGFAGLGSQPIDPLVSSIS
SLSMVGTTPTSSTGLPGFPSHLGGTLTTPQSPQKQFPVGNTGLSSMASLSSQLPTAFGGG
VSTLGNNMMAGAGGTDPFKLSRPSSIGGLSSSAAQAFAQASAKTTTTAALRPGELEPKNF
SSDLSNIWPEMNQTFSKEIDDEANSYFQKIYNQPPDPTMSVDEVLDMLKRFKDSPVKKER
EVFLCMLRNLFEEYRFFPQYPDRELHITACLFGGIVEQGLVTYMALGIALRYVLEALRKP
HGSKMYYFGIASLDRFKTRLKDYPQYCQHLASIAHFSQFPDHLVEHVQYGQQSREPPNRV
PTTPTPTTTTAVSLAPPAAAKTTATTTTSTTTTTATATTKAPSKTTAAIKGTREVPPSIA
STTNIDTLLTNAPLEENPEPPEGIQDKIFFIFNNLSQSNLQQKCDELKDIISEEYLPWVA
QYLVQKRASIEPNFHMLYANYLEVLKMNKCIDMVLKETYRNIKVVLLNSNKSSANYSDRT
ILKNLGHWLGMLTLYKNKPILQIDLDLKSLLLEAFFKGQQELLYVVPFVAKVLESSAKSK
VFKPPNPWTMGIMNVLAEMHKEQDLKLNLKFEIEVLCKTLNLDINELQPGNLLQDADRLT
KLQEQLMSPESKPDDIITTTATVAITTSVETTTMAAPVTTTTTTTTASPPAPPQPQFSFH
DLNVTSLAGLAPHIAVNNQIALFQANLAMRQCVRPSVERAVQELVHPVVERSIKIAMTTC
EQIVKKDFALDPEEARMRAAAHHMVRNLTAGMAMITCREPLLVSISSNFKQNCLSALKGA
TPQQKEMIEQAATVVASENVELACAFIQKCAVEKAVPEMDKRLATEFDLRKHARNEGRRY
CDPVVLTYQAERMPEQIRLKVGGVTPNQTAVYEEFARNIPGFLPTNDASQPTGFLAKPMQ
VTAKSYATDEITQIYDKCAADIEQYIHAAVAPPNNPHVQAMHSLLEAVLLARNSREIVTA
LALLQKAVEGLLEGLNPQMTTDPDLTIKFRDCHLLVLKALQDHRAYGPQWTNKQVTRVLC
ETRTDSRYNIEAVDCLIRNHLVNLQAYDMHLAQSLENGLNYLAVAFAMQLVKYYLIDEKM
SNVCNEADLFNTLQTLVRIASHSANPPDGLTQLVEVIRQNHDTAFLDKAPGGPTSMMHSG
ISQAREFDDPPGLREKTEFLLREWVNMYHSPAAGRDSTKAFSAFVGQMHQQGILKTDDLI
TRFFRLCTEMCVELCYRALAEQSAHNPTLIRAKCFHTLDAFVRLIALLVKHSGDATNTVT
KINLLNKVLGIVAGVLLQDHETRHTEFQQLPYHRIFIMLLLELNAPEHVLESINYQVLTA
FCNAFHVLRPSKAPGFAYSWLELISHRIFIARMLAILPQQKGWPMYAQLLIDLFKFLAPF
LRNAELAKHTTLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSAFPR
NMRLPDPFTPNLKVDMLSEIAHPPRILTNFAAMIQPASFKKDLDSYLKTRSPVTFLSELR
SHLQVSHEPGVRYNIPLMNALVLYVGSQAIAYIHSKGSTPSMSTITHSSHMDIFQNLAVD
LDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAETNTEAIQEQITRVLLERLIVNRP
HPWGLLITFIELIKNPSFKFWNHEFVHCAPEIEKLFESVARSCMQQKQGQGLTRETAEAP
AS
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgttgtcgctggccctgtctcaaatcagttactcagtggctaatctg
accaagaagaactataagtcaagtgttggggaaatttccagtcttgtttctcgacacgga
ccagaagctgataggcatctgttccgttgtcttttctcactggtcgatttcagtggtgat
ggtaaaagcagtggtaaagattttcatcagactcaatttttgattcaagagtgctcaacg
ctaattactaagcctaattttatatctacgctttgctacgccatcgataatccattgtct
catcaaaagagtatcaaatcatctacccagttgtttactcagttgagtagagttctgaaa
ttgaccaaagtgcaagaagtggtgtttgggatagctctgttacactcttcaaaccctgac
acaagatcacacgctgcacagttcgtaaaacagaagttacctgatttattgaggtcatac
attgattcagatatcagtagcaatcaagaaggaggtctcaacgacattgcaatagaagtg
ctgcatctgctactaattcacttattacacggaccaaagagccagtctggtattgggact
gatcaaaaagaagcttttctcaacacactcagaagggactttcccaagcatcaagtcccc
gttgtgttggctccactgttatattctgagaaacaagacatttcaatggatcgattgatt
acagatgtagtgaatgtaccaaatgccatgatggatggctcattggcggagttgatgctg
gagataggctatggttgctgtgccactgtggaagaatgccgcaacacgttagttcagttt
ggtaccaacagcatcacaccctcatcaattgccagagtcctgggaatgatggccaaaaca
cacactggcctcacagaccaaatggcccttcagtctttgactgctcctgggggtaacata
tggagtgacggaaaggacaagaccgaccagggaaatcagaacactacctggaatgtgact
atctttgtggaagtggtgaaggactgtgcaccacacatcaactggagggaggtgatattt
gagctggatcacacaggctttactgtcaaggatgccctagccctgagactgataaaagag
gcctacataagaggtctccaggaagttttccctgttgagtttttgtacaggacatggaaa
aacacagatggacagttgtcttggatacaacaggctttggcaaatccagacgttttctgc
ttctccgactacccgtgtcacactgctgttatagacattcttaaggcaccccctgatgat
gacaacagagaaatagctacctggaaatcacttgacctggtggaaactctactccgacta
tcagaaacagggaaatatgaccaagtgaaagcgttgtttggatttcccgtcaaacactgt
ccagatgtgctactactagctttactccaagtacagccattatggaacacactgcgccat
gaccttgtgtctactctactgccaatctttctgggcaatcatcccaatgcagcaatagta
ttacattacgcatggcatggccagggtcagtcacccactatcaggaaattggtaatgcat
gcaatggctgaatggtacatgagaggtgaaaactttgaccagagcaggctgtccaggatc
cttgacgtcgctcaagacttgaaagcgctgtcactcttgctcaatggaacaccgttcgca
tttgtcatcgatctggcatgcttggcgtcgaggcgggaatacctgaaacttgacaagtgg
ctgagtgacaaaatccgtgaacatggggaactgtttgtacaggcatgtgtgtcctttctg
aagaggagagctccccaagtgttgggaggattagtagataaaccagacatgggacccaaa
gcaggacagttaccacccgagacaattggaactatgctggcttgcatccaggcttgtgtt
gggtctgtacagcaagatttgtcagaaactattctcaccatggtagccaactcaggtggt
ttactgaaggccaggcagccaccgccaggtgtcataacaaaaactagtcagccagctgcc
atcacaggctttgcaggacttggatcacagccaattgacccactagttagcagtatatca
tcactgagtatggtaggaaccactcctaccagtagtactggacttcccggttttccttca
catttaggtggtactctgaccacgccacagtcaccccagaagcaatttcccgttggtaac
acggggctgtcgtcaatggcatccctgtccagtcagctacctactgccttcggtggtggt
gtgtcaaccctaggaaacaacatgatggcaggtgcaggagggacggatcccttcaaacta
tccaggccttccagtattgggggcttgagctcctcagctgcacaggcgtttgctcaggca
agtgccaagacaaccaccacagctgctctcagaccaggtgagctggaaccaaagaacttt
agtagtgatttgtctaacatatggccagagatgaaccagacattctccaaagaaattgat
gatgaagctaacagctatttccaaaagatctacaatcaacctccagatccaactatgtcc
gtggatgaagtcctggacatgttgaaaaggttcaaagactctccagtcaaaaaggaaagg
gaagtgttcctgtgtatgcttcgtaacctgtttgaagagtaccggttcttccctcagtat
ccagacagagaattacatatcactgcctgtttgtttggtggcatagtagaacaaggcctt
gttacgtacatggcactgggcattgctctccggtacgtgctggaagcactgcgtaaacct
cacggaagtaagatgtactattttggtatagcatcgctggacaggttcaaaacccgactg
aaggactatcctcagtattgccagcacctggcatccatagcccatttcagtcagtttcca
gatcaccttgtcgagcatgttcagtatggacaacagtcaagggagccaccaaacagagtt
ccaacaactcctaccccaacaaccacaacagctgtcagcctcgcacctcctgctgcagcc
aagactactgcaacaacgacaacttcaaccaccaccaccacggccacagcgacaaccaag
gcaccaagtaaaactacggcagcgatcaagggcacaagggaggtgccgccttccattgct
agtaccaccaacattgataccctgctgaccaatgcaccactggaggagaatccagaacca
ccggagggcattcaggacaagatcttcttcattttcaataacctctctcagtccaactta
caacagaagtgtgatgagctgaaagacatcattagtgaggaatacctgccttgggtagcc
cagtacctagtgcagaagagagccagcattgaacccaacttccacatgctttacgccaac
tacctggaagtgctcaagatgaacaagtgcattgatatggtgttgaaagaaacatacagg
aatatcaaggtggtgctgctgaactccaacaagagtagtgccaattattctgacaggacc
atattgaagaatctaggtcattggttaggaatgctgacactctacaagaacaaaccaata
ctgcagatagatttagatttgaagtcactgcttcttgaagcattcttcaaaggccaacaa
gagctgctgtatgtggtaccatttgtggccaaagtgcttgaatccagcgccaagagtaaa
gtgttcaagccacctaacccttggaccatgggtatcatgaatgtattggcagagatgcat
aaagaacaagatctcaagcttaatctcaaatttgagatagaagttttgtgcaagactctc
aacctggatatcaatgagttacaacctggaaacctcctccaggatgctgacaggctgacc
aaacttcaagaacagctgatgtctccagagtcaaaaccagatgatatcatcaccacaaca
gccaccgttgccatcacaacgtccgtggagacgaccacaatggcggcccctgttaccacc
acgacaaccaccaccacagcaagcccgccagcacctccacaacctcagttcagtttccat
gatctgaatgtgacgtcactggcaggattggctcctcatattgctgtcaacaaccagatt
gccctgttccaagccaacctggctatgagacagtgtgtccgaccatcagtggagcgtgct
gtacaggaacttgtccatccagttgtcgaaaggtccatcaaaattgctatgacaacatgt
gaacagatcgtcaaaaaggactttgcgttggacccggaggaggcacgcatgcgtgctgca
gctcatcacatggtgcgtaacttgacagctggcatggcaatgattacctgcagggaacca
ctcttggtcagcatcagtagcaatttcaaacaaaactgcctcagtgctctcaagggtgca
actccacagcagaaggagatgattgagcaagctgccacagttgttgcatcagagaacgta
gagctggcctgtgctttcattcagaaatgtgctgtagagaaagcagtaccagagatggat
aagagactggcaacagagtttgatctgagaaagcatgcaaggaacgagggaaggcgttac
tgtgacccagtggtgttgacatatcaggctgagagaatgccagaacaaatacggctcaag
gttggtggtgtgacaccaaaccaaacagcggtctacgaggagtttgctcgcaacatcccc
ggattcctgcccaccaacgatgccagccagccgacgggtttcttagctaaacccatgcag
gtaacagcgaagtcatatgccacagatgagatcacgcagatttacgacaagtgtgctgct
gacatagaacagtacatacatgctgcggtggcacctcccaacaacccacacgtacaagca
atgcacagtctactggaagccgttctgctggccagaaactccagggaaatagtcacagca
ctagcactgctgcagaaggcagtagagggtctgttggaaggtttgaaccctcagatgacg
actgatccagacctgactatcaaattccgtgattgccatctattggtgctgaaagcttta
caggatcacagagcctatggacctcagtggaccaataaacaggtcaccagggtactttgt
gaaactagaacagacagcaggtacaacatagaggctgtggactgtctgataagaaaccat
cttgtcaatttacaagcatatgacatgcatctagcacagtcattagagaatggtctgaac
tacctggcagtggcattcgccatgcagcttgtcaagtattacctgattgatgagaagatg
agcaatgtgtgcaatgaagcagatctcttcaataccttacagacgctagtcaggattgca
tcccattcagcaaacccacccgacggcctgacccagctggtcgaggtgatacgtcagaac
catgacactgccttcctagacaaagctccgggcgggcctacatccatgatgcattcagga
atctcccaagccagggagtttgatgatccgccgggtctgcgggagaagacggaattcctg
ctcagagagtgggtcaacatgtaccattcacctgctgcaggcagagatagcaccaaagcc
ttttcagcatttgttggacagatgcaccaacagggcatcctgaagacagatgacttgatc
acccggttcttccgtctctgtactgagatgtgtgtcgagttgtgctacagagcactagca
gagcagtctgcccacaaccccactttaatccgtgccaaatgtttccacaccctggatgct
tttgtcaggttgattgccttgctggtgaagcactctggtgacgccaccaacacggtaacc
aagatcaacctccttaacaaggtgcttggtattgtagctggtgtgttactgcaagaccat
gaaaccaggcacactgagttccaacaactgccttaccacaggatcttcatcatgctgctc
cttgaactcaatgcccctgaacatgtcctggaaagtattaactaccaagtactaaccgct
ttctgtaatgccttccatgtgctgcgacccagcaaggcccccgggtttgcctactcctgg
ctagagctgatatcacacaggatattcatcgcaagaatgctagcaatactcccacagcaa
aagggatggcccatgtatgcccagctgttgatagacctgttcaagttcctggcaccattc
ctcagaaatgctgaattggcaaaacatactacattgctgtacaagggcacccttcgtgta
ctactggtcctactccacgacttcccagaattcctgtgtgactaccattacggtttctgt
gacgtcatcccaccaaactgcatccagatgcgcaatctcatcctcagtgctttcccaagg
aacatgcggcttcctgatcccttcaccccgaacctcaaggtggacatgttgagtgagatc
gcacatccgccacgtatactcaccaactttgcggccatgatacagcctgcgtctttcaag
aaggatcttgattcctatttgaaaactcggtcaccggtaacattcttgtcagagttacga
agtcaccttcaagtgtcacatgaaccaggagtgaggtataacataccgctcatgaatgca
ctggtcctctacgtaggatcgcaggctattgcctacattcacagtaagggaagcacgccc
tctatgagtacaattacacattcgtcacacatggatatattccagaatcttgcggtggat
ttggacactgaaggtcgctacttattcctcaatgcaatagcaaatcaactgagataccct
aacagccatacacactacttcagctgcactcttctctacttgtttgcggaaaccaataca
gaagctattcaggaacagattaccagggtacttcttgaacgactcatagtgaacaggcca
cacccctggggtctgctcataacattcatagaactgatcaagaaccccagcttcaagttc
tggaaccatgagtttgttcattgtgcacctgaaattgaaaagttgtttgagtcggtggcc
aggagttgtatgcagcaaaaacagggacagggactgaccagagagactgctgaagcccca
gcttcgtaa
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integrated database retrieval system
