Perca flavescens (yellow perch): 114572084
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Entry
114572084 CDS
T07494
Symbol
col9a1
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv04510
Focal adhesion
pflv04512
ECM-receptor interaction
pflv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114572084 (col9a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114572084 (col9a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114572084 (col9a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pflv00535
]
114572084 (col9a1)
Proteoglycans [BR:
pflv00535
]
Extracellular matrix (ECM) proteoglycans
Others
114572084 (col9a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
114572084
NCBI-ProteinID:
XP_028459324
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Position
17:15287433..15306397
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AA seq
879 aa
AA seq
DB search
MCPQISIGEDHFPGFYIMSQFHIAELAKRGTVKKVTGSSPEHVAYQIGPAFNFRINTRSA
YPLGLPEEFAFVAVLRMSGSTINKNWNIWQMQDVNGNEQLAVRLNGESQSVEFTFTALET
GRQTVAFSPLTFLFNDQWHKVLLHVNRRSVSLFVDCVMIGSLNIPPRQKHNLDGFTLIGK
LKDNPVVAIPFELQSMLIHCDVTRARTDTCYDLPATTSTDVTEVQRSQGPPGPPGPAGVP
GIDGIAGERGADGEDGLPGPDGDAGKPGSSGLPGIPGNDGLTGPIGDPGPDGPNGQKGEP
GTSGPRGTAGVGPDGPPGPPGPGGLLGEGGKVGPIGSMGVRGPQGPAGPTGPRGASGMQG
SGDLCPNSCPPGTSGHPGLPGMKGHKGVKGEAGEPGKQGHKGEEGDQGGPGEVGSQGPVG
PQGIRGAMGMMGRKGDMGARGLDGVPGPQGVSGATGDQGQRGVMGELGRKGETGIQGLRG
ITGLPGPKGEAGLPGVDGREGIPGMPGAKGGIGKAGVPGEVGLQGLPGLPGVPGPKGLSG
PKGDAGQAGLPGTMGPAGKAGERGDQGELGPVGPIGEPGAIGEQGPVGSAGKPGARGPKG
DPGLHGLPGPPGLPGVKGERGERGEGGPKGEQGSQGDEGDAGDKGDIGESGESGPKGEVG
NPGEPGQRGPEGSRGQPGIEGPSGTPGPRGMQGNRGPPGVRGSQGPAGKEPSDQHIKQVC
MRVMQEQLAQLAASLRRPESGVVGLPGKPGPPGQPGSPGDNGFPGQSGARGLPGLKGPSG
IIGVKGPKGEMGDRGSRGPTVRGPKGQPGPPGLPGEPGKPGYGQDGRDGQRGPPGVPGQP
GVPGPPGAAGPNGYCDPSACNLQAGAAHQSLDVKGPAGN
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtgccctcagatcagcattggggaggatcatttcccagggttttatattatgtcacag
ttccacattgctgagctggcaaaaaggggcactgttaaaaaggttacaggatcatctcct
gagcatgttgcttatcaaataggcccagcattcaacttcaggatcaacacaagatcagct
tatcccctgggactgccggaggagtttgcatttgtggcagtgctgcgcatgagtggcagc
accatcaataaaaactggaatatctggcaaatgcaggacgtgaatggcaacgagcagctg
gccgtcaggctcaatggggagtctcagtctgtggagtttaccttcacagcgctggaaacc
gggaggcagactgttgctttcagccccctgacttttcttttcaatgatcagtggcacaaa
gtcctgctacacgtcaacaggcgctcagttagccttttcgtggactgtgtcatgatcggt
tccctgaatataccacctcgacaaaaacacaatctggatggattcacgttgataggaaag
ctcaaagacaacccggtggtggcaattccgtttgaactccagtcaatgctgattcactgc
gacgtgacgagagcacgaacagatacttgttatgacctcccagccacgacatcgactgat
gtaacagaggtgcagaggagccaaggacctcctggccctcctggacctgcaggtgtccca
ggaattgatggcattgctggggaaaggggagcagatggcgaggatggacttcctggacct
gatggagacgcaggtaaacccggctcttcaggattacctggaattcctggaaatgatggt
ttgaccggccctattggagatccagggcccgacggccccaacggacagaaaggtgaacct
ggaacatctggacctcgtggaacagctggtgttgggccagatggaccccccggaccaccc
gggcctggaggacttctgggtgaagggggaaaagttggaccaattgggtccatgggtgtg
agagggccacagggacctgctggacctacggggcccagaggtgcatctggaatgcaaggc
agtggcgacctgtgtccaaactcttgtccacctgggacctctggacatcctggccttcct
ggcatgaagggccacaaaggtgtaaaaggtgaagccggagaacctgggaaacaagggcac
aagggtgaggagggggaccagggaggtccaggggaggtcggatcccaaggaccagtgggt
cctcagggaattcgtggagccatgggaatgatgggccgcaagggagacatgggagctcga
ggtcttgatggagttccaggtccccagggtgtttcaggggcaactggggatcaaggccag
agaggcgtgatgggcgagcttgggcgtaaaggtgaaacgggtattcaagggctgagagga
atcacaggtcttccaggtcccaagggagaggctggcttgccgggtgtggacggtcgcgag
ggtattcctgggatgcctggagcaaagggaggcattgggaaggcaggcgttcctggagag
gtcggacttcaggggcttcctggtttgcccggtgtacctggaccaaaaggcttgagtggc
cctaagggagacgctggtcaagcaggcctgcctggaacaatgggacccgctggcaaagca
ggcgaacgcggagatcagggagagttgggacctgttggacctattggtgaacctggagct
ataggagaacaaggccccgtaggttcagccggcaagccaggtgccagaggacccaaaggt
gaccccggccttcatggtctccctggtcctcctggccttcccggggtgaagggagagagg
ggggaacgtggagaaggaggacccaaaggagagcagggatcacaaggtgatgagggagac
gctggagacaaaggggatattggtgagtcaggagaatcaggacctaaaggagaggttggt
aaccccggcgagcctggccaaagaggtcccgagggaagtcgaggccagcctggaatcgag
gggccgtctggcacacctggcccgcggggcatgcagggaaacaggggtccacctggagtc
agagggtcccagggccctgcgggtaaagagccaagtgatcagcacatcaaacaagtttgc
atgcgagtaatgcaagaacagctggctcagctagctgctagtttaaggaggccagagtct
ggagtagttggtttacctggaaaacctggacctccagggcaacctgggtctccaggagac
aatggcttccctgggcagagtggagcaagaggccttccaggactcaaagggccatcggga
attattggagtgaaaggacccaaaggtgaaatgggagaccgaggctccagagggcccact
gtgcgcggacctaaaggtcagccaggacctcctggacttcctggtgagccaggcaaaccc
ggctacggtcaggatggtcgggacgggcagaggggacctcctggtgttcctggacagccc
ggtgtacctgggcctcctggtgcagctggtcccaatggttactgcgacccgtcagcctgc
aacctccaggccggggccgcccaccagtctctggatgtgaagggacctgcagggaactaa
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