Pseudomonas fluorescens Pf0-1: Pfl01_5644
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Entry
Pfl01_5644 CDS
T00283
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pfo
Pseudomonas fluorescens Pf0-1
Pathway
pfo03420
Nucleotide excision repair
pfo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pfl01_5644 (uvrD)
03430 Mismatch repair
Pfl01_5644 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfo03400
]
Pfl01_5644 (uvrD)
Enzymes [BR:
pfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pfl01_5644 (uvrD)
DNA repair and recombination proteins [BR:
pfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pfl01_5644 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
Pfl01_5644 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
AAA_22
DUF1175
Motif
Other DBs
NCBI-ProteinID:
ABA77380
UniProt:
Q3K4C4
LinkDB
All DBs
Position
6325758..6327941
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSIL
SVTFTNKAAAEMRHRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDD
QQRLVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQASGDLFLATMRGIYEAYE
AACQRAGVIDFSELLLRALDLWRDHPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLGK
GGDSLMVVGDDDQSIYGWRGAKIENIHQYSSDFPDSVTIRLEQNYRSTAGILKAANALIA
NNTGRLGKELWTDGGDGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGI
GEKTVEAIRDHARHSDVSMWEAMGQLVANKGLTGRAAGALGAFIELIENLAAKCAEMPLH
LMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARNFENTEEDEELTPLAAFLGHA
SLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGGNQ
SMGGSNLFSGSEIPETGLSLGQAVRHSIFGDGVILNFEGAGAQARVQVNFAEGSKWLMLG
YAKLEAI
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctcccttctgctgaactccctcaacgatgcccaacgccaggccgta
gcggctcccgttggtcgtcaattggtcctggccggtgccggctccggcaaaacccgagtg
ctggtgcaccgtatcgcctggttgatccaggtcgagaacgcctcgccccactcgattctg
tcggtgaccttcaccaacaaggccgctgccgagatgcgtcaccgcatcgaacaattgctg
ggcatcaatccggccggcatgtgggtcggcaccttccacggcctggcgcaccgcctgctg
cgggcgcactggcaggaagccgggctgagccagaccttccagattctcgacagcgacgac
cagcaacgcttggtcaagcgggtgatccgcgagctggggctggacgagcaacgctggccg
gcccgtcaggcccaatggttcatcaacgggcagaaagacgaaggtctgcgtccgcaacac
attcaagccagcggcgatctgttcctggccaccatgcgcggcatttatgaagcgtacgag
gccgcatgccagcgtgccggcgtcatcgatttctccgaactgctgctgcgcgccctcgac
ctgtggcgcgaccacccgggcctgctggcgcactaccagaagcgcttccgacacattctg
gtggacgaattccaggacaccaacgccgtgcagtacgcctggttgcgtctgctgggcaag
ggcggcgacagcctgatggtggtcggcgacgacgaccagtcgatctacggctggcgcggc
gcgaaaatcgagaacatccaccagtattcttcggacttcccggactcggtgaccatccgt
ctggagcagaactaccgctccacggccggcatcctcaaggccgccaacgccctgatcgcc
aacaacaccgggcgtctgggcaaagagctgtggaccgatggcggcgatggcgaagcgatc
aatctttacgccgccttcaacgagcacgatgaagcacgctacgttgtcgaaaccatcgaa
agcgcgctgaaaaccggcttggcccgcagcgatatcgcgattctctaccgctccaacgcc
caatcgcgcgttctggaagaagccttgctgcgtgaacgcattccgtaccgcatctatggc
ggccagcgcttcttcgagcgggcggaaatcaagaacgccatggcttacctgcgtttgctg
gaaggtcgcggcaatgatgcggccctggagcgggtgatcaacgtcccagcgcgcggcatc
ggcgagaaaaccgtcgaagcgatccgcgaccatgcccgtcacagcgatgtgtcgatgtgg
gaagccatgggccagctggtggccaacaaaggcctgaccggtcgcgccgccggtgcgctg
ggcgcgtttatcgaactgatcgaaaacctggctgccaagtgcgccgagatgccgttgcac
ctgatgacccagaccgtcatcgagcaatccggactgatcgcctaccacgaagcggaaaaa
ggcgagaaaggccaggcccgggtggaaaaccttgaggaactggtcagcgctgcgcgcaac
ttcgagaacaccgaagaagacgaagaactgacgccactggcggcatttctcggccacgct
tcactggaggccggtgacacccaggccgacgagcacgaagacagcattcagttgatgacc
ctgcacagcgccaagggcctggaattcccttacgtgttcctggtgggcatggaagaaggc
ttgttcccgcacaagatgagcctggaagagccgggacgccttgaggaagaacggcgcctg
gcctatgtcggcattacccgggcgatgcagaatctggtgatgacctatgctgaaacccga
cgcctgtacggcagcgaaacctacaacaaggtgtcgcgtttcgtacgggaagtaccgaaa
ggcctgattcaggaagtacgcctgtccaacagcgtcagccggccgttcggcggtaaccag
tcgatgggcggcagcaacctgttcagcggcagcgagattccggaaaccggcctgagcctt
ggccaggctgtccgtcactcgatcttcggcgacggcgtgatcctcaacttcgaaggcgcc
ggcgcccaggcccgggtgcaggtgaatttcgccgaaggcagcaagtggctgatgctcggg
tacgcgaagctggaagccatataa
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