Poecilia formosa (Amazon molly): 103138350
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Entry
103138350 CDS
T07984
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pfor
Poecilia formosa (Amazon molly)
Pathway
pfor03008
Ribosome biogenesis in eukaryotes
pfor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfor00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103138350 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
103138350 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfor03019
]
103138350 (xrn1)
03009 Ribosome biogenesis [BR:
pfor03009
]
103138350 (xrn1)
03016 Transfer RNA biogenesis [BR:
pfor03016
]
103138350 (xrn1)
03036 Chromosome and associated proteins [BR:
pfor03036
]
103138350 (xrn1)
Messenger RNA biogenesis [BR:
pfor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103138350 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
103138350 (xrn1)
Ribosome biogenesis [BR:
pfor03009
]
Eukaryotic type
Pre-60S particles
RNases
103138350 (xrn1)
Transfer RNA biogenesis [BR:
pfor03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
103138350 (xrn1)
Chromosome and associated proteins [BR:
pfor03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103138350 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
103138350
NCBI-ProteinID:
XP_007552570
Ensembl:
ENSPFOG00000013932
UniProt:
A0A087Y8E7
LinkDB
All DBs
Position
Unknown
AA seq
1556 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHKIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALDKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKVSTDKLWQNVKVFLSGHETPGEGEHK
IMEFIRSENAKPNHDPNTRHCLYGLDADLIMLGLTSHEHNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSELKRHLGSDYDLERIIDDWILMGFLVGNDFIPHLPH
LHINLDALPLLYKTYVSVLPSLGGYLNENGYLNLRNFEKYLEKLSEFDREHFSEVFVDLK
WFESKVGNKYLNESAGLAAEQEAAIQAGRKTEDSSIHLTTLTSSEKVTEQEKDDVADDDD
DEEEEEEDEMFETEFRQYKRTYYMTKMGVDVVSDEFLAKQAKCYVEGIQWILHYYYHGVQ
SWSWYYPFHYAPFLSDIRNISELKLTFDLGKPFMPFQQLLAVLPAASKELLPEGYRDLMT
SPNSPIIEYYPLDFKTDLNGKQQEWEAVVLIPFIDETCLLAAMEPFSSKLTKEEKARNRH
SECAMYSYDPDTDFTYASSLPKLFPNIVHCHAREVQIPMDAWHVPSDHVSKRVDRSNLYF
CGFPTLHHIKHKFYKKKSGVVVFQQSSRGENMILDILPSQDGETICDHVAADLLGKPVFV
NWPHLEEARVIAVSDGETKFALEEPPGVQQVYDRPSSPPPTKVSYLSDKEQKDWVKDVQG
ITEHFFKRKGIAVNETTVLLYGQMLTGRKYVPKACGVVELEKQWAKQVLPFAYQTVVKDI
KAFYSSLTCFKSLDELFPPSTTVFMVGSPYYGAMGEVQDSQDVIKDGRIRVVFSVPHEPQ
LEHLIQNQHKYSVKYCPGYVLASRLGVSSYLVSRFSGSIFIGRGSKKNPCGEQRANVGLN
LKFNKKNEEVPGYTKRTEKEWLYSAAVEELLAEYLDRFSEVFDAVSRNSHDDVFYEDDIW
PGEDQNGAEKVAEITSWLKSHPVSSTSRASCDLQVLDSAIVEKIEEAVEKTKVKKSTKKV
RVTVKPHLLFRPLEQQQGVVPDPDAEYRLFDRVVNIRESFTVPLGHRGTIIGIKGADREA
EVLYEVLFDEEFAGGLNIRCTSPRGYRLPPCALINLSHGTRLDHGSHKLTAIVKPQPATS
ANFNMQRLAGLNHSPRSPFVPTQHNKNAVAPQGNKTPSKGPNQKQQVKSKEEYSNVWQSL
QKTGPPSQPPAHWHNNEAALQQGKNQRSSKAIPASGIRLLKKNEDVNSFFPPKNTANKGT
TEFEVLIANLKISQGNQQTPPPPAPPEEPSNQSDGPLSPQSFAMKGTLVLKEMLKIDGAG
KGSPTSQESADAAPSAGQQQNRRRSSKKLAAKINNPPGESVTLAPPAPAASAHAALGGKV
SELACFCVGVGMAPPDFSFIRNRQGPVVCQVKLSNGLMIHGPQCQSENEAKEKAAFFALQ
RLNSLGSGLPLPPHLYPGMAQMHPPPMGAMPPVFSQQGQCVALIVCIREPQWCLCV
NT seq
4671 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgccgaaattttaccgctggatttctgaacgctatccttgcctcagtgaagtt
gtcaaagaacacaagattccagaatttgacaacctttatctggacatgaatggcatcatc
caccagtgctctcacccaaatgacgaagacgtccattttcgcatctccgaggagaagatc
tttgcggacattttccactacctggaggtactgtttcggatcatcaagccacgcaaggtc
ttcttcatggctgtggacggtgtggcaccaagggcaaagatgaaccagcagagaggacgc
agattcaggtccgccaaagaagcagaggagaagattaaaaaggctctggataaaggagag
gttcttccaacagaagctcgcttcgactccaactgtatcactcctggcaccgattttatg
gcgagactacaggaacagctcaagtactttgtccacaacaaggtgtctacagacaagctg
tggcaaaacgtcaaagtcttcttgtcgggtcacgagacaccgggtgaaggagaacataag
atcatggagtttatccgttccgagaacgccaaaccgaatcatgatcccaacacccgacac
tgcctgtatggcctggatgctgacctgatcatgttgggcttaaccagtcatgagcataat
ttctccctgctcagagaggaagtccgctttggaggaaaaaaatcccagaaaagaataacg
gctccagaggagacgactttccacctgctgcatctgtctctgatgagggagtacatcgac
tacgagttctcagagctgaagcgtcatctgggttctgattatgatctggagcgaataata
gacgactggatattaatggggttcctcgtaggaaacgatttcatccctcacctccctcat
cttcacattaatcttgatgctttgccgctgctgtacaaaacttacgtcagcgtactgccc
agcttggggggttacctgaatgagaacggctacttaaacctcagaaattttgagaaatac
ctggagaaactttctgagtttgaccgggaacactttagcgaagtgtttgtagacttgaag
tggttcgagagtaaagtcggcaacaaatatctgaacgagtcggccggtctggcagccgag
caggaagcggcgatccaagccgggagaaagacggaggactcttctattcatctcaccacc
ttgacctcatcggaaaaagtgactgaacaagaaaaagacgacgtggcagatgatgatgat
gatgaggaggaggaggaggaagatgagatgtttgaaacagagttcagacaatacaaacgg
acatactatatgaccaagatgggcgtggatgtggtgtctgatgaatttctcgccaagcaa
gccaagtgctacgtggaaggcatccagtggattcttcactactactaccatggtgttcag
tcgtggagctggtactaccctttccactacgccccgtttctgtcggacatccgaaacata
tcagagttgaagctgacctttgacctcgggaaacccttcatgcctttccagcagctgttg
gctgtcctgcctgctgccagcaaggagctgctcccagagggctacagggacttgatgacc
agtccaaactctcccattatcgaatactatcctcttgacttcaaaactgacctcaatgga
aagcagcaggagtgggaagctgtggtgctcattccgttcatagacgagacgtgcctttta
gcagctatggagcctttcagttccaaactgacgaaggaggagaaggccaggaaccggcac
tcagagtgcgccatgtactcctacgacccagacacggacttcacatacgcctcctccctg
ccgaagctcttcccaaacatcgtccattgtcacgccagggaagtccagatccccatggac
gcctggcatgtgccgtcagaccacgtcagcaagcgcgtcgaccgctccaatttatacttc
tgcggtttccccactctgcaccacatcaagcacaagttttataagaagaagagcggagtg
gtcgtgttccagcagagcagcagaggagaaaacatgattctggacatccttcccagtcag
gatggggaaacgatatgtgatcatgtagctgcagaccttttggggaagcctgtgtttgtc
aactggccccatctagaggaagctcgtgttattgcggtatcagacggagaaaccaaattt
gctctagaggaacctcctggagtccaacaagtatacgacaggccgtccagtcctccaccc
actaaagtgtcttatctatctgacaaagagcagaaggactgggtgaaggacgtccaggga
atcactgaacatttcttcaagaggaaaggcatcgcagtgaacgagacaaccgtgcttttg
tacggtcagatgctgacaggaaggaagtacgtccctaaagcctgtggagtggtggagctg
gagaaacagtgggccaaacaggttctcccattcgcctaccagactgtggttaaggacatc
aaggccttttactcgtctctgacctgctttaagagtttggatgaacttttccctccatca
acgacagtcttcatggtgggaagcccttactatggtgccatgggagaggttcaagactct
caagacgtcatcaaagacggtcggatacgggtggttttcagcgtgcctcacgagccgcag
ctggagcacttgatccagaatcagcataaatactcagtcaagtactgcccaggctacgtc
ctggcttcccgcctcggcgtcagcagctatctcgtctcccgcttctcgggaagcatcttc
atcggccgaggctccaagaagaatccgtgcggggagcaaagagctaacgttgggctcaac
ctgaagttcaacaagaagaacgaggaggttcccgggtacaccaagagaacggagaaagag
tggctctactctgctgccgtggaggagctgcttgctgaatacctggacagattttcagaa
gttttcgatgcagtgtccagaaacagtcacgacgatgtgttctacgaagacgacatctgg
ccgggagaggatcagaacggggcggagaaggtggctgaaatcacctcgtggttgaagagt
catccagtcagctccaccagccgggcgtcatgcgacctccaggttctggactccgccatt
gtggagaagatcgaggaagccgtggaaaagaccaaggtgaagaagagcaccaagaaagtc
cgcgtgacggtcaagcctcatctcctgtttcggcccctggagcagcagcagggcgtggtc
ccagaccccgacgccgagtaccggctgtttgacagagtcgtcaacatcagggagagcttc
actgtcccgctgggacacagagggacgatcattggcattaaaggagcggaccgcgaggct
gaggttctctacgaggttctgtttgacgaggaatttgctggaggtcttaacatcaggtgc
acctccccccgcggttaccgcctccctccctgcgccctcatcaacctgtcccacggcacc
cggctggaccacggctcccacaaactcaccgccatcgtcaaaccgcaaccggccaccagc
gccaacttcaacatgcagcgcctggcgggcctcaaccactcgcctcgctcgccctttgta
cccacccagcacaacaagaacgccgtggcgcctcagggtaacaaaaccccatctaaaggt
cccaaccagaaacaacaagtgaagtctaaggaggagtacagcaacgtgtggcagtcgctc
cagaagaccggtcctcccagccagcctccagctcactggcacaataatgaagcagcttta
caacagggaaagaatcagcgttccagtaaagctattccagccagtggcatcagactatta
aagaaaaatgaagacgtcaactccttcttccctccaaagaacacagccaataagggcacc
actgagtttgaggttctcattgcaaacctaaagatctcccagggcaaccagcaaacccca
ccgcctcctgcccctccagaggaacccagcaaccagtcagacggcccgttgtccccccag
tccttcgccatgaaaggaaccctggttctgaaggagatgctgaagatcgacggcgctgga
aaaggaagtccaacatcccaggagtcggcagacgctgctccctctgctggccagcagcag
aacagaaggcgatcaagcaagaagctggctgcaaaaataaacaaccctcctggcgaatcc
gtcacgctggcccctccagcgccggctgcctctgctcacgccgccctgggcgggaaggtg
tcggagctggcttgcttctgcgtgggcgtaggcatggccccgcccgacttcagctttatc
cgcaaccgacagggtccggtagtgtgtcaggtgaagctgtccaatgggttaatgattcac
ggacctcagtgtcagtcagaaaacgaagctaaggagaaagctgccttctttgccctccaa
agactgaactctctgggctctgggttgcccctccctcctcatctatatcccgggatggct
cagatgcatccgccgccgatgggagccatgccgccagtcttcagccagcaaggtcagtgt
gttgctcttatcgtctgcatcagggagcctcagtggtgcttatgtgtttaa
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integrated database retrieval system
