Peribacillus frigoritolerans: L8956_00660
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Entry
L8956_00660 CDS
T08180
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pfri
Peribacillus frigoritolerans
Pathway
pfri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L8956_00660 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfri03021
]
L8956_00660 (rpoB)
03400 DNA repair and recombination proteins [BR:
pfri03400
]
L8956_00660 (rpoB)
Enzymes [BR:
pfri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L8956_00660 (rpoB)
Transcription machinery [BR:
pfri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L8956_00660 (rpoB)
DNA repair and recombination proteins [BR:
pfri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L8956_00660 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ULM97338
LinkDB
All DBs
Position
122215..125784
Genome browser
AA seq
1189 aa
AA seq
DB search
MTGQLVQYGRHRQRRSYARISEVLDLPNLIEIQTASYQWFLDVGLKEMFQDISPIEDFTG
NLSLEFIDYSLAEPKYSVEETKERDVTYSAPLRVKVRLVNKETGEVKDQDVFMGDFPLMT
ETGTFVINGAERVIVSQLVRSPSVYYNGKMDKNGKLGFSATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPITVLMRALGFGTDQEIIDLIGDNEYLRNTLEKDNTESVEKALLEIYERL
RPGEPPTVENAKSLLVSRFFDPKRYDLANVGRYKINKKLHIKNRLFGQRIAETLIDPETG
EIIVEKGTMLDRRTLDRILPHIEGGIGFKTFHPSGGVVEEETLLQPIKVFAPNDAEGEKV
INIIGNAYVTDQVKNITPADIISSISYFFNLLHGVGITDDIDHLGNRRLRSVGELLQNQF
RIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAEL
THKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNPY
GFIETPYRRVDPETGKITSQIDYLTADEEDNYVVAQANVRLSDDGSFLDNDVVARFRGEN
TVVPRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLQPEAPRVGT
GMEYVSAKDSGAAVICKHPGIVEHVESREVWVRRVSEVDGQQVKGNLDKYRLLKFIRSNQ
GTCYNQRPIVSVGDNVVKGEILADGPSMEKGELALGRNVLVAFMTWDGYNYEDAIIMSER
LVKDDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGD
LLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGDE
LPPGVNQLARVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPYLPDGTPVDIMLNPL
GVPSRMNIGQVLELHLGMAARALGIHVASPVFDGATEEDVWGTIEEAGMSRDAKTVLYDG
RSGEAFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGL
DVKILNAEDREIEMRDLEDEDEANQADKLSLDSETKDMVASEVGAPVKE
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaacttgttcagtatggacgacaccgccaacgtagaagttatgcaagaatc
agtgaggttttggaccttccgaatctgattgaaattcaaacagcttcttatcaatggttt
ctagatgtaggtttaaaggaaatgttccaggatatttctcctattgaggattttacaggt
aatttatcgttagaattcatcgattacagcttagctgagccgaagtattctgtggaagaa
acaaaagaacgcgatgttacgtattctgcaccacttcgtgtgaaagtgcgccttgttaac
aaagaaacaggggaagtaaaagaccaagatgtatttatgggcgacttcccgctgatgact
gaaacaggtacatttgtcatcaatggtgctgaacgggtaattgtatcccaattagtgcgc
tcaccgagtgtttactacaatgggaaaatggataaaaacggtaagcttgggttctctgcg
accgttattcctaaccgtggcgcatggctcgaatacgaaacagacgccaaggatgttgtg
tatgttcgaatcgaccgcaccaggaaattaccgataacggtattgatgcgtgcccttgga
ttcggaacagatcaagaaatcatcgatttgatcggtgacaacgaataccttcgcaacact
cttgaaaaggataacaccgagagtgtggaaaaagcattactagaaatctatgagcgtcta
cgcccaggtgaaccgcctactgtcgaaaacgcgaaaagtcttttagtatcccgctttttt
gatccgaaacgttatgatttagctaatgtaggccgttataaaataaacaaaaaactgcat
attaagaaccgtttattcggacaacgtattgcagagactttgattgatcctgaaacggga
gaaatcattgttgaaaaaggtacaatgcttgatcgccggactcttgataggattctgcct
catatcgaaggtggaataggattcaaaacattccatccatcaggtggtgtagtagaggaa
gaaactcttcttcaacctattaaagtgtttgcaccaaacgatgctgaaggcgaaaaagtg
atcaatatcatcggtaatgcttatgtgaccgaccaggtcaaaaacattacaccggctgat
atcatttcttccatcagttatttctttaatttattgcatggtgtgggaatcacggatgac
attgaccatttaggtaaccgtcgtctgcgttccgttggtgaattgctgcaaaaccaattc
agaattggtttatcccgtatggagcgtgttgtgcgtgaaagaatgtccattcaggatacg
aatacaatcactccacagcaactaatcaacattcgcccggtcattgcatccattaaagag
ttctttggaagctcacagctttcccaattcatggatcaaacgaacccattggctgaattg
acacataaacgtcgtctatcagcattgggacctggtggtctgacacgtgagcgtgctggc
tttgaagtacgtgacgttcattattcccactatggccgcatgtgtccgattgaaacacct
gagggaccgaatattggtttgattaactcgttatccagttttgcaaaggttaacccatat
ggcttcattgaaacaccataccgccgtgtggaccctgagacaggtaaaatcacaagccaa
attgactacttaacagctgatgaggaagataattatgtagttgcccaagcgaatgtacga
ctgtcagatgacggctcattccttgataatgatgttgttgcacgtttccgcggtgaaaat
accgttgttccgcgtgaccgcgtagattacatggatgtatctcctaaacaggttgtatct
gctgcgacagcatgtattcctttcttggaaaatgatgactccaaccgtgcccttatggga
gcgaacatgcaacgtcaagcagttcctttgctgcaaccggaagcccctcgagtaggaacg
ggtatggagtatgtttcagcgaaagactccggtgctgctgtaatctgtaaacaccctggt
atcgtagagcacgttgaatcacgtgaagtatgggtacgtagggtaagtgaggttgacgga
cagcaagtaaaaggaaaccttgataaataccgtctattaaaattcattcgttccaaccaa
ggaacgtgctataatcaacgccctatcgtaagtgttggcgacaacgttgtaaaaggtgaa
attcttgctgatggtccttcaatggaaaaaggtgagttggcacttggacgtaacgtattg
gttgccttcatgacatgggatggatataactatgaagatgccatcatcatgagtgaacga
ttggttaaagatgatgtgtacacttccattcatattgaagaatatgaatctgaatcacgc
gatacaaaattaggacctgaagaaatcacacgtgatatccctaacgtaggggaagatgcg
cttcgtaaccttgatgagcgcggaataatccgtgtgggtgctgaagtgaaagacggagac
cttctcgttggtaaagtcacgcctaaaggtgtaacggaactgactgctgaggaacgtcta
ttacatgcaatcttcggtgaaaaagcacgtgaagtaagggatacatcacttcgtgtacct
cacggcggcggcggaatcgttcttgatgttaaagtattcaacagagaagacggcgatgaa
ttgcctccaggtgtaaaccaactcgcacgcgtatatatcgttcaaaaacgtaaaatccat
gaaggcgataaaatggctggacgacatggtaacaaaggggtaatctccaggattcttcct
gaagaagatatgccttatttaccagacggaactccagtcgacatcatgttaaacccattg
ggtgtaccttcacgtatgaatatcggtcaggtgttggagcttcacttaggtatggctgca
cgcgcacttggcattcatgtagcatctcctgtattcgatggtgccactgaggaagatgtt
tggggtacgattgaagaagccgggatgtcccgtgatgcaaaaactgtcctttatgacggc
cgttcaggtgaagcattcgataaccgtgtatcagttggtgtcatgtatatgatcaaactg
gcacatatggtcgatgataaacttcatgcacgttcaactggaccttactcccttgttacg
cagcaaccacttggtggtaaagcccaatttggcggacagcgtttcggtgagatggaagta
tgggcacttgaagcttatggtgctgcttatacattacaagaaatcctaaccgttaaatca
gatgatgtcgtgggtcgtgttaaaacgtacgaagcgatcgtcaaaggtgaaaatgtccct
gaaccaggcgttcctgagtccttcaaagtattgattaaggagcttcaaagtttaggattg
gatgttaaaattcttaatgccgaagatcgtgaaatcgaaatgcgtgatttggaagatgaa
gatgaagccaaccaagcagacaaattaagccttgattcagaaactaaagatatggttgct
tccgaagtaggggcacctgtcaaagaataa
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