Pelosinus fermentans: JBW_03891
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Entry
JBW_03891 CDS
T03813
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pft
Pelosinus fermentans
Pathway
pft03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pft00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JBW_03891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pft03021
]
JBW_03891
03400 DNA repair and recombination proteins [BR:
pft03400
]
JBW_03891
Enzymes [BR:
pft01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JBW_03891
Transcription machinery [BR:
pft03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JBW_03891
DNA repair and recombination proteins [BR:
pft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JBW_03891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
AJQ29228
UniProt:
I9NTJ0
LinkDB
All DBs
Position
complement(4324861..4328658)
Genome browser
AA seq
1265 aa
AA seq
DB search
MFNPVPVGKKIRYSYAKIKEVLDMPNLIEIQKNSYNWFLKEGLQEIFHDISPIQDFTGNL
VLTFEKFTLGEAKYHVEECKERDVTYSAPLRVNVRLINRETGEIKEQEVFMGDFPLMTEN
GTFIINGAERVIVSQLVRSPGAYYNETIDATGKKLYNSTVIPNRGAWLELETDANDVMSV
RVDRTRKLPATVLIRALGYASNAAIAELFHDDVRVRATLERDNTNSREEALVEIYKRLRP
GEPPTVDNATQLLESLFFDSKRYDLATVGRYKLTKKLGWRRRLMGKTLYQAIANAETGEI
IVPADTIVDEKVLDQIDQSGVFANAALIEVKVKLKDGSPVKMLCNPELPYNHRTITREDI
LASVNYLLNLMDGFGNVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDVD
VITPQALINIRPVVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGF
EVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTFGRINEFGFIETPYRKIDKENRIVTEDV
RYLTADEEDEVVCAQANEPLNENSWFVEPRVTVRHRHEILVIPAEKVDYMDVSPKQVVSI
ATAMIPFLENDDANRALMGANMQRQAVPLLRTQAPLIGTGMEYKAARDSGVLILARNAGV
VEKVTATEIKVRTERGTLDNYKLLKYLRSNQGTCINQKPIVYKGEQVEKGQVLVDGPATD
QGELALGFNVLVAFMPWEGYNYEDAILLSEKIVKDDIYTSIHIEEYECDARDTKLGPEEI
TRDIPNVAEEVLKDLDDRGIIRIGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKA
REVRDTSLRVPHGEAGKIVDVKVFSRENGDELPPGVNFLVRVYIAQKRKISEGDKMAGRH
GNKGVVSRIMREEDMPFLPDGTPVQIVLNPLGVPSRMNIGQVLETHLGMAAAAFGMQIRT
NAPGVAERLKEVGYDSDKHGLPKPGIAGINLATPVFDGAHEEEVFKTLKAAGLPEDGKTV
LYDGRTGEAFDNRVTVGWVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFG
EMEVWALEAYGAAYTLQELLTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQ
SIGLDVKILNEDAQEIMIDDTDEDINQVAKELELNIGVPVNTAPETHTRTASEIEPDLVD
DFDNPDEMEPLEEELDIIAEIGEMDEDVAEEIEIPGRKSVKKVKSKDKKPTQRDFLEELD
DEEIE
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatcctgttccggttggcaaaaagatcagatatagttatgccaagatcaaagaa
gtactggacatgcccaatctgattgaaattcagaagaattcctataactggtttctaaag
gaagggctgcaagaaattttccatgatatttcgcctattcaggactttacaggtaatttg
gttctgacatttgaaaaatttacattaggcgaagccaagtatcacgttgaagaatgtaaa
gaacgcgacgttacttattcggctcctttacgtgtcaatgttcgattgattaatcgtgag
actggcgaaattaaagagcaagaagtatttatgggcgatttcccgctcatgacagaaaat
ggtacttttatcattaatggtgcagagcgggttattgttagtcagttggtacgttcccca
ggtgcgtattacaatgaaacaattgatgcaacaggtaaaaaactgtataactctacagtg
attccaaatcgtggtgcgtggttagaactcgaaacagatgccaatgatgtaatgtctgtt
cgggtagatcgcacacgaaaattaccagcaacagtattgattcgtgctttaggctacgcg
tcaaatgctgctattgcggaactgtttcatgatgatgtgagagttcgcgccactttggaa
cgggataataccaattccagagaagaggctctagttgaaatctataaaagattacgtcca
ggtgaacctcctaccgtagataatgctactcagttattagaatcactattttttgactct
aaacgttatgatttagcaactgtagggcgttataaattaaccaaaaaactaggctggcgc
cgtcgtttgatgggcaagactctttatcaggcaattgcaaatgcagaaacaggagaaatt
attgttcctgcagatacaatcgtggacgaaaaagttcttgatcagattgatcaaagtggt
gtctttgcaaatgcagctttgattgaagtaaaagtcaaactaaaagatggatcaccagtt
aaaatgctatgcaatcctgaattaccttacaatcatcggacaattaccagggaagatatt
ttagcttctgttaactatcttctcaatttgatggatggatttggtaatgtggatgatatc
gatcatttaggtaaccgccgcctgcgttcagtcggtgaattgctgcaaaatcagttccgt
atcggtttatctcgtatggaacgggtagtgaaagaacgtatgaccattcaagatgttgat
gtcattactccccaagcattgattaacatccgccctgttgtggctgctatcaaagaattc
tttggctccagtcagttgtcgcagtttatggatcagacaaatcctttggcagaacttact
cataaacgtcgtttaagtgccttgggacctggtgggctaagtcgtgaacgcgccggtttt
gaagtgcgtgacgtacatcactctcactatggtcgtatgtgtccaattgagacaccagaa
ggtccgaatatcggtcttattggttcattgtcaacctttggacgtattaacgagtttggt
tttattgaaaccccttaccgtaaaattgataaggaaaatcgtatcgtaacagaagatgta
cgatatttgacagctgatgaagaggatgaagtagtttgtgcgcaagcgaatgaaccgtta
aatgaaaatagctggtttgttgagccgcgagttaccgtacgtcatagacatgaaatttta
gttattcctgctgaaaaagttgactatatggatgtatcgccaaagcaggttgtatcaatt
gctacggctatgattccattcttagaaaacgatgatgcaaatcgtgccttgatgggcgcg
aatatgcaacgtcaggcagtacctttacttagaacacaggctccgctcattggaactgga
atggaatataaagctgccagagattctggtgttcttattctagctagaaatgccggtgta
gttgaaaaagttacagctactgaaattaaagtacgcacggaacgtggtacgttagataac
tataagttgctgaaatatttgcgttctaatcaaggaacttgcattaatcagaagccgatt
gtttataaaggcgagcaagtagaaaaagggcaggtattagttgatggacctgctaccgat
caaggtgaattagcattaggctttaatgtacttgtagctttcatgccatgggaaggttac
aattatgaagatgctattttactaagtgaaaaaattgtaaaagatgacatctacacttcc
atacatattgaagaatatgaatgtgatgccagagatacgaagttaggaccggaagaaatt
actcgtgatattccgaatgtggctgaagaggtactaaaagatcttgatgatcgcggtatc
atacgcattggcgctgaagtgcgaccaggggatattctagtgggtaaagtgactccaaaa
ggtgaaacagaattaacggcagaagaacgcttgcttcgtgccatctttggtgagaaagct
cgtgaagttcgagatacatcattgagagtgccacatggcgaagctggtaaaattgttgac
gtaaaggtattcagccgggaaaatggtgatgaattaccaccaggtgtgaatttcttagta
cgtgtatatattgcccaaaaacggaagatttccgaaggggataagatggcagggcgtcat
ggtaataagggtgttgtttctcgcattatgcgtgaggaagatatgccgttcttgcctgat
ggcacgccagtacagattgtgttaaatccattgggtgtaccatcacgtatgaatatcgga
caggtactggagacccatttaggaatggctgctgctgcttttggtatgcaaatcagaacc
aatgctcctggtgttgcagaacgactgaaggaagttggctatgactctgataaacatggt
cttcctaaaccggggattgctgggattaacttagcaactccagtatttgatggggctcat
gaagaagaggtctttaaaacattaaaagcagctggattgccggaagatggtaaaactgtc
ttatatgatggacgtacaggggaagcttttgataaccgcgttaccgtaggttgggtatac
atgttgaaattggcccatttggttgatgacaaaattcatgcacgatctactggtccttac
tctttggttacacaacagccattgggtggtaaagcacaattcggtggtcagcgttttggg
gaaatggaagtttgggcattagaggcatatggtgccgcttataccttacaggaactctta
acggtaaaatccgatgatgtagtagggcgtgtaaaaacctatgaagcgattgtgaaaggt
gaaaacatacctgaacctggagtgcctgaatcctttaaggttttaattaaagagcttcaa
agtattgggcttgatgttaaaatcttaaatgaagatgcacaagaaattatgattgatgac
actgatgaagatattaatcaagtggctaaagaacttgaacttaatattggtgttccagtg
aatactgcacctgaaactcatactcgcactgctagtgagattgagccagatctggtggat
gattttgataatcctgatgaaatggaaccattagaagaagaattagatattatagcggaa
atcggtgagatggatgaagatgtagcagaggaaatcgaaatacctggacgaaaatccgtc
aagaaagtaaaaagtaaagataagaaaccaacacaacgtgatttcttagaagagttagac
gacgaggaaattgagtaa
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