Pseudomonas fuscovaginae: NLK61_16720
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Entry
NLK61_16720 CDS
T10659
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pfuv Pseudomonas fuscovaginae
Pathway
pfuv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfuv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NLK61_16720 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfuv03021
]
NLK61_16720 (rpoB)
03400 DNA repair and recombination proteins [BR:
pfuv03400
]
NLK61_16720 (rpoB)
Enzymes [BR:
pfuv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NLK61_16720 (rpoB)
Transcription machinery [BR:
pfuv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NLK61_16720 (rpoB)
DNA repair and recombination proteins [BR:
pfuv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NLK61_16720 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
UUQ62929
LinkDB
All DBs
Position
3699155..3703228
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLDAFYTTNVFHVKGET
LSLELVPQRLRGEIAVLDIQDGNGKVIVEQGRRITARHINQLEKAGVKELEVPLDYVLGR
TTAKVIVHPATGEILAECNTELNSELLAKMAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVTDDIVFLSAIEEADHVIAQASATMNEQKVLVDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVEPGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGHTVEGGAGLKKGQEITNEVLDGLEHGQWFKLRMT
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKVADLRKFLHEIYNEIGGRNEELDSFSDQEILDLAKNLKGGVPMATP
VFDGAKEVEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggacgtaccgtacctcttggctatccagctggattcgtatcgcgaattcttgcag
gcgggcgcgaccaaggaccagttccgtgacgtcggtctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaacgctgctctggagtacgttggttatcgtctgggc
gaaccggcctttgatgtcaaggaatgcgtattgcgcggtgtgacctacgcggttccgctg
cgggtgaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaattcccctgatgactgagaacggtaccttc
gttatcaacggtaccgagcgcgtaatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgatcacgaccgcggcaagacgcacagctccggcaaactgctgtactccgcgcgtatc
attccttaccgcggttcgtggctggacttcgagttcgacccgaaagactgcgtcttcgtg
cgtatcgaccgtcgtcgcaagctgccggcttccgtgctgctgcgcgcgctgggctacagc
accgaagaagtgctcgacgcgttctacaccaccaacgtcttccacgttaagggcgaaacc
ctgagcctggaactggtgcctcagcgcctgcgtggtgaaatcgctgttctcgacatccag
gatggcaacggcaaggttattgtcgagcagggtcgtcgtatcaccgctcgtcacatcaac
cagctggaaaaagccggtgtcaaggagctggaagtaccgctggactacgtcctgggccgt
acgaccgccaaggtcatcgtgcacccggctaccggcgaaatcctggctgaatgcaacacc
gagctgaacagcgagctgctggccaagatggccaaggcccaggttgttcgcatcgaaacg
ttgtacaccaacgacatcgactgcggtccgttcatctccgacaccctgaagatcgactcc
accagcaaccaactggaagcgctggtcgagatctatcgcatgatgcgtcctggcgagccg
ccaaccaaggatgctgccgagaccctgttcaacaacctgttcttcagcgccgagcgttac
gatctgtccgcagtcggccgcatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagatatcgtcgaggttctcaagaccctggtcgacatc
cgtaacggcaaaggcatcgtcgacgacatcgatcacctgggtaaccgtcgcgtccgttgc
gtcggcgagatggccgagaaccagttccgtgttggcctggtgcgcgttgagcgtgcggtc
aaggaacgtctgtcgatggccgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctgtcgcagttcatg
gaccagaacaacccgctctccgagattacccacaagcgccgtgtttccgcactcggccca
ggtggtctgacccgtgagcgcgcaggctttgaagttcgtgacgtacacccgacccactac
ggtcgtgtttgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactccctg
gcggcctatgctcgcaccaaccagtacggcttcctcgagagcccgtaccgcgtggttaaa
gagggtgttgtcactgacgacatcgtgttcctgtccgctatcgaagaggccgatcacgtg
atcgcgcaggcttcggcgaccatgaacgaacagaaagtgctggtcgacgagctggtagcg
gttcgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaagcaggttgtttcggttgcagcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtacctaccctgcgtgcc
gacaagccgctggtcggtaccggcatggagcgtaacgttgcccgtgactccggcgtttgc
gtcgtggctcgtcgtggtggcgtgatcgactccgtcgatgccagccgtatcgtggttcgt
gttgccgatgacgaagttgaaccgggcgaagccggtgtcgacatctacaacctgaccaag
tacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgat
cgcgttcagcgtagcgacatcatggccgacggcccgtccaccgacatgggtgaactggcg
ctgggtcagaacatgcgcatcgccttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtcggaacgcgttgttcaggaagaccgtttcaccacgatccacatccaggaa
ctgacctgtgtggctcgtgacaccaagcttggcccagaggaaatcaccgcagacatcccg
aacgtgggtgaagctgcgctgaacaagctggacgaagccggtatcgtctacgtcggtgcc
gaagttggcccgggcgacatcctggtcggcaaggtcactccgaaaggcgagacccaactg
actccggaagaaaaactgctgcgcgcgatctttggcgagaaggccagcgacgtcaaggac
acctccctgcgtgtgccgactggcaccaagggtaccgtcatcgacgtccaggtcttcacc
cgtgatggtgttgagcgtgacagtcgtgccctgtccatcgagaagagccagctcgacgag
atccgcaaggacctcaacgaggagttccgtatcgttgaaggcgcgaccttcgaacgtctg
cgttcggccctggtcggtcacaccgtcgaaggcggcgctggcctgaagaaaggtcaggag
atcaccaacgaagttctcgacggtctcgagcatggtcagtggttcaagctgcgcatgacc
gaagacgcgctgaacgagcaactcgagaaggctcaggcctacatcgttgatcgccgccgt
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggct
ccgggcgtactgaagatcgtcaaggtctacctggcaatccgtcgtcgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctccgtgatcatgccggtcgaa
gacatgccgcacgacgccaacggtactccggtcgacgtggttctcaacccgttgggcgta
ccttcgcgtatgaacgtcggtcagatccttgaaacccacctgggcctcgcggccaagggc
ttgggcgagaagatcaaccgcatgctcgaagagcagcgcaaggtcgctgacctgcgcaag
ttcctgcacgagatctacaacgagatcggcggtcgcaacgaagagctggacagcttctcc
gaccaggaaatcctggacctggcgaagaacctcaagggcggcgttccaatggccacccct
gtgttcgacggcgccaaggaagttgaaatcaaggccatgctgaaattggctgacctgcca
gaaagcggccagatgcagctgttcgatggtcgtaccggcaacaagttcgagcgtccggtt
accgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttactcagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcatac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggtcggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
