Pseudomonas simiae PCL1751: PF1751_v1c04880
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Entry
PF1751_v1c04880 CDS
T03766
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
pfw
Pseudomonas simiae PCL1751
Pathway
pfw02024
Quorum sensing
pfw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PF1751_v1c04880 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PF1751_v1c04880 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfw03019
]
PF1751_v1c04880 (hfq)
03036 Chromosome and associated proteins [BR:
pfw03036
]
PF1751_v1c04880 (hfq)
Messenger RNA biogenesis [BR:
pfw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
PF1751_v1c04880 (hfq)
Chromosome and associated proteins [BR:
pfw03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
PF1751_v1c04880 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AJP50195
UniProt:
A0A370XT31
LinkDB
All DBs
Position
570503..570763
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AA seq
86 aa
AA seq
DB search
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSAAGDDAADAEPGNA
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagggcattcgctacaagacccttacttgaatactttacgtaaagagaaagtg
ggggtttccatctacctggtcaacggtatcaagctgcagggcacgatcgagtcgttcgac
cagttcgtgatcctgctgaagaacaccgtcagccagatggtctacaagcacgctatctcg
acagtcgttccagttcgtccaatccgtctgcctagcgcagcaggtgatgatgcagctgac
gctgagccaggtaacgcctga
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