Pseudochaenichthys georgianus (South Georgia icefish): 117440265
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Entry
117440265 CDS
T09629
Symbol
ptchd4
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
117440265 (ptchd4)
Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
Other domain-containing proteins
Patched domain-containing proteins
117440265 (ptchd4)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
DUF7041
Motif
Other DBs
NCBI-GeneID:
117440265
NCBI-ProteinID:
XP_071058105
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All DBs
Position
24:complement(7190600..7262663)
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AA seq
921 aa
AA seq
DB search
MCFIGGDGASASGILWRMLRQVIHRGLKASFYWLGLFVSRHPVFFLTVPAVLTIIFGTTV
LSRFKPETDLEVLVAPTHSLAKIERSLANSLFPIDQSKHKLYSDLHTPGRYGRLILLVKS
GGNILELADQVLQVHKQVLDLHVNYKGFNYTFAHLCVLSHRDKRCLLDDIITIFEDIRQA
VLSNSTFHKVPVSYPNTTLKDGRVSFIGHQLGGVSFSQNSRDQQVKFARAVQITYYLRNH
GPVVQDVIAERWENEFCALVNRLSTAKAPHASDQLHIQSLTSFSLWRDFHQTSVLAKGEV
LVSLVLVLLAATISSSMRDCLRGKPFLGLLGVLTICIANVTAAGIFFISDGKFNSTLLGI
PFFAMGHGTKGVFELLAGWRRTRENLPFKERVADAFADVMVCYTMTSSLYIITFGMGASP
FTNIESVKIFCQSMCVAILVNYFYVFSFYGSCLVFAGQLEQNRYHSVFCCKIPSVEYLDR
QPTWFKTMMSDGHDLSTHHDSVPYQNHFIQHFLREHYTEWITNTYVKPFVVILYLIYASF
SFMGCLQISDGSNIVNLLASNSPSVSYALTQQKYFSNYSPVIGFYIYEPIEYWNSTVQEH
LKTLSHGFNKISWMDNFFHYLRVVNVSASTKGDFITILKGSFLRSPEYQHFSEDIIFSKN
RETDEYDIIASRMYLVARTTEKKREEVVELLEKLRPLMLINSIKFIAFNPTFVFMDRYSS
SVISPILTSGFSVLTILILTFFLVINPLGNFWLILTVTSVELGVLGLMTLWNVGMDSISI
LCLIYTLNFAMDHCAPHLYTFVLANEHTRTQCIKLALEEHGAAILQNTSCFVIGIMPLVF
VPSNLTYTLFKCSLLIAGCVVLHCFVILPVFLTFFPPSKTRHKKKKRAKRKERERERERE
REREEIECIEVRENPDHVTNV
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgtgcttcatcggaggagacggggcatctgcaagcgggattttgtggaggatgctgcgg
caagtgatacacagagggctcaaggcttcgttctactggctgggcttattcgttagcagg
caccccgttttcttcctcaccgtccccgccgtgctcaccatcattttcggaactaccgtg
ctgagcagattcaagccggagacggacctggaggtgctggtcgccccgacgcacagcctg
gccaagatcgagcggagtctcgccaacagcctgtttcccatcgaccagtcgaagcacaag
ctgtactcggatttgcacaccccgggcagatatggcaggctgatcctgctggtcaagtcc
ggggggaacatcctggagctggccgaccaggtcctgcaggtccacaagcaggtgttggat
ttgcacgtgaattacaagggattcaattacacgttcgcgcacctctgcgtgctgagccac
cgggacaagcgctgcctcttggatgatatcatcaccatcttcgaagatatcaggcaggca
gtgctctccaacagcactttccataaggtgcccgtgagctatccaaacacaacgctaaag
gatggccgtgtctccttcatcggccaccagttgggtggtgtgtccttctcgcaaaacagc
cgcgaccagcaggtcaagttcgcacgcgccgtccagatcacctactacctccgcaaccat
ggacccgtggtgcaggatgtcattgcggaacgctgggagaacgagttttgcgcccttgtc
aaccggctctccacggccaaggcgccccacgcgtccgaccagctccacatccagtccctc
acctccttcagcctttggcgggacttccaccaaacgagtgttctggcaaagggggaggtg
ctggtcagcctggtgctggtgctcctggccgccaccatctccagctccatgcgggactgc
ctgagggggaagccgttcctggggctgctgggagttctgaccatctgcatcgccaacgtg
acggccgcagggatcttctttatatcggacgggaagttcaactccacactgctggggatc
ccgttctttgccatgggccatggaaccaaaggagtgttcgagctgctggcaggctggagg
agaacgagggagaaccttcccttcaaggagcgtgtggcagacgcttttgccgatgtgatg
gtgtgctacaccatgaccagctcactctacatcatcacattcggcatgggagctagccct
tttaccaacatcgagtcggtgaaaatcttctgccagagcatgtgcgttgccatcctggtg
aactacttctatgtcttctccttctacggctcctgcctggtgtttgccggacagctggag
cagaaccgctaccacagtgttttctgttgtaaaatcccctcagtggagtacctggaccgc
cagcccacgtggtttaaaacaatgatgagtgacggccatgacttgtccacgcaccacgac
agcgtcccctaccagaatcacttcatccagcacttcctgcgtgagcactacacagaatgg
attaccaacacttatgtgaaaccttttgtggtcattctatatctcatctacgcatctttc
tcattcatgggatgtttacaaatcagtgatggatcaaatattgtgaacctgctggcgagt
aactctccgagtgtttcgtatgccctgacccagcagaaatacttcagtaactacagtccc
gtgattgggttttacatttacgaacccatcgagtactggaactccacggtgcaggagcac
ctgaagactttgagtcatggcttcaacaagatctcttggatggacaactttttccactac
ctgcgggtggtgaatgtgagtgcgtcaaccaagggtgacttcatcacaatcctcaagggc
tcctttctgcgcagccctgagtaccagcacttctctgaggacatcatattctccaagaac
cgtgagaccgatgagtacgacatcatcgcctctcggatgtatttggttgcccggacgacg
gagaagaagcgagaggaggtggtggagcttctggagaagcttcgtccgttgatgctgatc
aacagcatcaagttcattgccttcaatcctacgtttgtgttcatggaccgctacagctcc
tctgtcatctcgcctatcctgacctcaggcttcagcgtactcacaatcctcatcctcact
ttcttcctggtcatcaaccccttgggtaacttctggctcatcctcacagtaacgtccgtc
gagctgggcgtcttgggtttgatgaccctctggaacgttggcatggacagcatctcaatc
ctgtgccttatttataccctcaacttcgccatggatcactgtgcaccacacttgtacact
tttgtgctggccaatgagcacactaggacgcaatgcatcaagttggcactggaggagcac
ggggcggcgatcctgcagaacacgtcctgcttcgtgatcgggatcatgcccctggtgttt
gtgccttccaatctgacctacacactgttcaagtgctcccttctcatcgcgggctgcgtt
gtgctgcactgcttcgtcatcctgcccgtcttcctgaccttcttcccgccgtccaaaacg
agacacaagaaaaagaaaagggccaagcgtaaagagcgggagagggagcgggagagggaa
agagaaagggaggagatagaatgcattgaagtcagggaaaatcctgatcatgtgacaaat
gtctga
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