Pseudochaenichthys georgianus (South Georgia icefish): 117440810
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Entry
117440810 CDS
T09629
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04510
Focal adhesion
pgeo04512
ECM-receptor interaction
pgeo04518
Integrin signaling
pgeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117440810
04518 Integrin signaling
117440810
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117440810
09142 Cell motility
04820 Cytoskeleton in muscle cells
117440810
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pgeo04147
]
117440810
00536 Glycosaminoglycan binding proteins [BR:
pgeo00536
]
117440810
Exosome [BR:
pgeo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117440810
Glycosaminoglycan binding proteins [BR:
pgeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117440810
Hyaluronan
Extracellular matrix or blood plasma proteins
117440810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
VWA_3
Collagen
VWA_CoxE
vWA_SIBA-E
Copine
F_bP_aldolase
Motif
Other DBs
NCBI-GeneID:
117440810
NCBI-ProteinID:
XP_033932937
LinkDB
All DBs
Position
Unknown
AA seq
2023 aa
AA seq
DB search
MAARGQLLLGLITVACFYGNAAAKTVCTQEAVADIVFMVDGSWSIGSENFKQIRQFLYTL
VNSFDVDAEHVRIGLVQYSTTPRTEFKLNTFQEKKDILQYINVLPYMGGGTQTGLGLDYM
LTEHFVEAAGSRGQNVPQIAVVITDGKSQDNVESHAQDLKRKGIVLYAIGIKDADEEQLK
EIANEPHSQHVYSVSNFAALQGISQSIAQTLCTTVEEVKRQLLQLTQECAKASVADMVFL
VDGSSSIGIDNFQEVRKFLRSVVTGLDIGPDKVRIGLAQYSDEPYQEFLLKDHMDKTSLL
EAVDTFQYRTGGTETGKAIDFLRTQYFTEEAGSRAGQRVPQIAVVITDGDSTDDVVAPAQ
RLRQQGVIVFSIGVGAANQQELESIANQPSERFRSFIGNYAALQTLKDRLLKTVCISVED
QKQALAERFADIFFLVDSGVTAAEFQQIRSILTRVANQLNIGASAYRLGWAQYGQDVKVE
HLLNAHQTKIETLNDVKRFRQRQLQPNEPRNLGKALMYANTNLFTSGAGSRAEQGYRRFL
VVISGKDSDDPVYRESRLIKSSGITVVGLSLGASMQEMRIVATPPYIYQSLTNIVPIMRA
AFEREEAETLLTGDCKAAKLADIVFIVDGSGSIGTPNFQLMRSFLHSIVNGLEVSPSRVR
VGIVMYNKIATAQVYLNTFNDKDELLKYIKILPYHGGGTNTGEALKFAREKVFIKQKGSR
KDSGVQQVAVVITDGESQDNVSTPAADLRRAGVTVYAVGVKDANHAQLVEMASYPENKHK
FIVDSFAKLKSLEQSLQKSLCQNILRSAISVSSRGNAIKEGCVQKEEADIFFLIDHSGSI
YPNDFKDMKKFMIEFLNTFRIGPQHVRIGVVKYADSPNLEFDLTTHSDVKSLENAIEAIR
QIGGGTETGRALTSMVPHYNRAVLTRGHEVPEYLVVITDGKSADVVKGPAEQVRAQGVTV
YAIGVKSADPVQLQEIAGDPKRTFFVNNFDALTPIKDDIITDICSSEACNDKPGDLLFLI
DSSGSIDPKDYEKMKDFMKAVITKSAVAQDNVHVGVMQFSTIQRLAFPLNQYYSREQMLN
AITAMQQIGGGTHTGKAITDVSQYFDGLRGGRPDMTQTLIVITDGKAQDEVKQPAVALRN
KGVEIYAIGVVDANTDQLLEISGSTKRTYTERNFDALKDLETELALALCSADTDCKKIEK
ADIIFLVDGSTSITLEKFRSMQKFMSSMVNQTTVGKDLARFGVILYSTDANSVFTLKQYS
SKREVLRAIQELKSPYGDTYTGKALAYSLPFFNKDNGGRADLNVPQILMVITDGDATDRH
SLVAPSVALRKHEVSVFSIGVEGANTTQLEIMAGHDSSKVFYVDNFKALETLYKNITQVL
CNFTKQVCDKKQADLVFLLDQSGSINQEDYSTMKKFTTDLVNSFKVGENLVRVGLAQFSS
EFQGEFDLNKFDSREVVNKHILSMTQRGGGTKIGLALDSIRGYFEASRGGRRSDGISQNL
VLITDGESQDDVEDAADRLRALGVEVFAIGIGNVHDLELLQITGTPERLFTVTNFGSLDK
IKQTVVTTICKSTSDSSDGGDCSIDIAMGFDITRRTAGGTLVSGHTKLQSFLPEIARYVS
SVQGLCCTGTAPVKTNIAYRVVAEDGVTRYDFNFVGYSEEVVKKVMTLNLTEPTYFNTAM
LKSFAEKFNTQSSAGVKVLVIFSDGLDGDAMSLKQEAELLRRSGVSALLTVALEGTRGPA
QLQMVEFGRGFEYKLPLSISMPSVGSTVLKQIDTVSDRECCGVMCKCSGDVGNRGSRGSP
GTKGVPGLRGFLGYPGEEGVPGDRGGPGSSGPQGVQGCSGLRGQKGYRGLRGNRGEDGEN
GLDGVDGEQGLAGRDGARGQLGRGGNSGIRGIRGQAGLKGQRGLRGDPGEPGADNTSPGA
KGEHGNPGLPGGPGVDGRPGESGVVGNSGPDGRRGPLGEKGTPGQPGVLGLQGVAGASGP
QGLRGVRGQPGPKGLAGPHGLHGGPGTAGGQGSVGRQGANGQK
NT seq
6069 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgagggggcagcttctccttggcctcatcacggtggcatgtttctacggcaac
gctgcagcgaagacagtctgcactcaagaggccgtggccgacatcgtcttcatggtggac
gggtcgtggagcatcggcagcgaaaacttcaagcagatccgtcagtttctgtacacgctg
gtgaacagcttcgacgtcgatgctgaacacgtgcgcatcgggttggtccagtacagcacc
actccccgcaccgagttcaagctcaacaccttccaggagaagaaggacatcctgcagtac
atcaacgtcttgccttacatggggggcggcacgcagactgggctcggcctggactacatg
ctgactgagcactttgtggaggcggcgggaagccgaggccagaacgtgccgcagatcgcc
gtggtgattactgacggaaagtctcaagacaacgtagagtcccacgctcaggatctgaag
agaaaggggattgttttgtacgccattggtatcaaggatgcagacgaagagcagctgaag
gagatagccaacgagccgcacagtcagcacgtctacagcgtgtcgaactttgcagcgctg
cagggaatttctcagagcatcgcccagacgctttgcactactgtagaggaagtcaaacga
caactcctgcagttgactcaagaatgtgccaaagccagcgtggcggacatggtctttctg
gtggacggatcctccagcatcggcatcgataacttccaggaggtgcgaaagtttctccga
agtgtcgtcacaggactcgacatcgggcccgacaaggttcgtatcggcctggctcagtac
agcgatgaaccctaccaggagttcctgctgaaggatcacatggacaagacatccctgctg
gaggcggtggacacatttcaataccgaacaggaggcacagaaacaggcaaggccatcgac
ttcctccggacgcagtacttcacggaggaagcagggagccgagccggccaaagggtgcct
cagatcgctgtggttatcacggatggagactccacggacgatgtggtcgcaccggcccag
cgcctgaggcagcagggtgtcatcgtgtttagcatcggggtgggagcagccaaccagcag
gagctcgagtccatcgccaaccagccttcagagcgcttccggtccttcatcggtaactac
gcggctctgcagacgctgaaagaccgtctgctgaaaacggtgtgcatctcagtggaggat
cagaagcaagccttggcagaaaggtttgcagacatcttctttctggtggacagtggcgtg
actgcagcagagtttcagcagatcaggagcatcctcacccgagtcgccaatcagcttaac
atcggagcgtccgcctaccgcctgggctgggctcagtacggtcaagatgtcaaggtggaa
catcttctcaatgcccaccaaaccaaaatcgagacgctcaatgatgtgaagcgtttccgc
cagcgtcaactgcaacccaacgagcctcgcaatctgggcaaagcgctgatgtacgccaac
accaacctcttcacgagcggtgcgggaagccgtgcggaacaaggctaccgacggttcctg
gtggttataagtgggaaagactctgatgatcccgtgtatagggagtcccgcctgatcaaa
tcttctggaataaccgtggttgggttgagccttggtgcatcaatgcaggaaatgagaatc
gttgccactccaccgtacatataccagtccctcaccaacattgtacccataatgagggct
gcttttgaaagagaggaagcggagactcttcttactggagattgcaaagcagccaaactg
gccgacattgtgttcatcgttgatgggtctggaagtataggaacccccaacttccagctc
atgcgcagtttcctgcactcgattgtgaacggcctggaagtcagtccatccagagtgcga
gtcggcatcgtgatgtacaacaaaatagccaccgcgcaggtatacctcaacaccttcaac
gacaaggacgaattgctgaagtacatcaagatcctgccctatcatggaggcggcacgaac
actggagaggccctgaagttcgcccgggagaaggtcttcatcaagcaaaaaggaagcagg
aaagattctggtgtccagcaggtggcggtggtgatcacagacggggaatcgcaggacaac
gtaagcacgccggcggctgaccttcgtcgggccggtgtcactgtgtacgcagtaggagtc
aaagatgccaaccatgcccagctggtggagatggcgtcttatcctgagaataagcacaag
ttcatcgtggacagttttgccaagctgaaatctctggagcagagcctgcagaaaagtctg
tgccaaaacatcctccggtcagcaatatctgtcagttcaagaggaaatgccatcaaagaa
ggctgtgtgcaaaaggaggaagctgacatcttcttcctcatcgatcactcgggaagcatt
taccccaacgacttcaaggacatgaagaagttcatgattgagtttctgaataccttccgc
attgggccacaacatgtccgcataggggtcgtgaaatacgcagattccccaaatttagag
ttcgatctgacaacgcactcggatgtgaagagtttggagaatgccatagaagcaattaga
caaataggaggcgggacagaaacaggaagagcactgacttccatggtcccacactataat
cgagcggtgctcacgcgtggtcacgaagtccccgagtacctggtggtgatcactgacgga
aagtccgctgacgtggtgaaaggacctgcagaacaggtgagggcgcagggagtcactgtg
tacgccatcggggtgaaaagtgcagatccagtccagctgcaagagatcgccggcgacccc
aagaggactttctttgtcaataattttgacgctctgactccaatcaaggacgacatcatc
acagacatctgttcttcagaggcttgcaatgataaaccgggcgacctcctcttcctgatt
gacagctctggaagcattgacccaaaagactacgagaaaatgaaagacttcatgaaagct
gtcatcaccaagtccgccgtcgcgcaggacaacgtgcatgtcggcgtcatgcagttcagc
accatccaacgactagcgttccccctcaaccaatactacagcagggaacaaatgctgaac
gccatcacagccatgcagcagattggcggaggcacgcacacggggaaagccatcacggat
gtgtcgcagtactttgatggactgagaggagggcgtcctgacatgacgcagacgctgata
gtgattacagacggcaaggcgcaagacgaggtcaaacaacccgccgtggctctgaggaac
aagggagtggagatctacgccatcggagtggtggacgccaacaccgaccagctgctggag
atcagcggctcaacaaagaggacgtacactgagaggaattttgatgctctgaaggacttg
gagaccgagttggccttggcactatgtagcgcagacacagattgtaagaagatagaaaaa
gctgacattattttcctggtggacggctccacgagcataaccctggagaagttcagaagc
atgcagaagttcatgtcgtccatggtgaaccaaaccaccgtcggcaaggacctcgcgcgc
ttcggagtcatcctctactccaccgacgccaactctgtgttcactctgaaacagtacagc
tccaaacgagaggtcctcagagctattcaagagctgaagtccccgtacggagacacctac
accggcaaggctttggcgtactctttaccgttcttcaacaaagacaatggcggccgggcg
gacctcaacgtgcctcagatcctcatggtgatcacggacggggatgccaccgatcgccac
agtctggtggcgccgtccgtggctctgcggaaacacgaggtcagcgtcttcagtatcgga
gttgaaggagccaacacgacacagctggagatcatggccgggcacgactcctccaaagtt
ttctacgtggataactttaaggccctggagactctgtacaagaacattactcaagtcctc
tgcaacttcaccaagcaagtttgtgataaaaagcaggccgacctggtcttcctgctcgat
cagtccggcagcatcaaccaggaggactacagcaccatgaagaagttcaccacagatcta
gtgaacagcttcaaagtgggtgagaatctagtgcgtgtcgggctcgcccagttcagcagc
gagttccagggcgaatttgacctcaacaagttcgacagccgggaagtggtgaacaagcac
atcttgagcatgacgcagaggggtggcggcactaaaatcggactggccctggactccatc
aggggttatttcgaggcatcacgtggcggccgaagatctgacgggatctcccagaatctg
gtgctgatcacagacggggaatctcaggacgacgttgaggatgccgccgatcgtctccgg
gctctgggcgtcgaggtgttcgccatcggcattggaaacgtccacgatctggagctcctg
cagatcacaggaacaccggagaggctgttcaccgtgaccaacttcggcagcttggataag
atcaagcaaacggtcgtcacgacaatctgcaaatccacatcagacagcagtgatggtggt
gactgcagcatcgatatcgccatgggattcgatattactcggagaacggctggtgggact
ctggtcagcggtcacaccaagctccagagcttcctgccggaaatcgcccgttacgtgtcc
tcggttcagggtctgtgctgcaccggcactgcgcccgtcaaaaccaacatcgcgtatcga
gtggtggctgaagacggagttactcgttacgacttcaactttgtgggctacagtgaggag
gtggtgaagaaagtcatgaccctgaatctgacagagcctacttacttcaacaccgccatg
ttgaaatccttcgcagagaagttcaacacccagtccagtgccggcgtgaaggtgctggtg
atcttctccgacgggctcgatggagacgcgatgagtctgaagcaagaagcagagctgctc
cggaggtctggggtcagcgctctgctcaccgtggccctggaggggacgcggggccccgcc
cagctgcagatggtggagttcggacgagggttcgaatacaaactccccctgagcatcagc
atgccgagcgtgggcagcaccgtcctcaaacagatcgacacggtgtcggacagggagtgc
tgcggcgtcatgtgcaagtgttcgggagatgtaggcaaccggggctctcggggctccccg
gggacaaagggtgtgcccggactgagggggttccttggataccccggagaggagggcgtc
cctggggatcgagggggtcctggatccagtggacctcagggtgtgcagggttgctcggga
ctcagaggacagaagggataccgaggcctgcgggggaacaggggcgaggacggagagaac
ggtctggacggagtggacggagagcagggactcgcggggagagacggagctcggggacag
cttggacgcggaggaaactcaggtatccggggcatcagagggcaggcgggacttaaagga
cagcgaggactgagaggagatccgggggagcccggtgctgataacaccagcccaggagcc
aaaggagaacacgggaaccctgggttaccggggggccccggcgtggacggacgaccaggg
gagagcggagtcgttggaaactcgggtccagacgggagaagagggccgctgggtgagaag
ggtacacctggacagcctggagttctgggactccaaggcgtcgccggtgcttcagggcca
cagggtctcagaggggtcagaggtcaacctggaccgaaaggactcgctggcccgcatgga
cttcacggaggcccggggaccgctggaggccaggggtccgtggggcggcaaggagccaac
ggacagaag
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integrated database retrieval system
