Pseudochaenichthys georgianus (South Georgia icefish): 117446821
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Entry
117446821 CDS
T09629
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117446821 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117446821 (smarcd1)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117446821 (smarcd1)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117446821 (smarcd1)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117446821 (smarcd1)
PBAF complex
117446821 (smarcd1)
GBAF(ncBAF) complex
117446821 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
117446821
NCBI-ProteinID:
XP_033939164
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All DBs
Position
5:27265012..27297795
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AA seq
533 aa
AA seq
DB search
MAARGGFQSAPTGGVVGAMGPGPPVQGAGPGMGPGTPTGRMVPSSAQQNHMYRSPMPGPG
YPRPGMPPSNRMTPQGPAMGPPGYGNSPVSRPVMPGVMDPSRKRPAPQQIQQVQQQNRNQ
HTKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRK
LRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDSAVSKYEATKQKRKFSSFFKSLV
IELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPRL
ARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQILIPERPTHPRIKKQN
GTEIFETQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKT
QMNSFLLSTASQQEIAGLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRD
LKTMTDVVGNPEEERRADFYYQPWAQEAVCRYFYSKVQQRRQELETALGIRNT
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagagggggatttcagtcggcaccgacgggcggtgttgttggagcaatggga
cccggaccaccggtacagggcgcaggaccaggcatgggtcctgggactcctactggacgg
atggtaccgtcgtcggcccagcagaaccacatgtaccgttccccgatgcccgggcctggg
tacccgagaccgggcatgcccccatccaatcgcatgaccccacaggggccggccatgggg
cccccaggatacggcaacagccctgtgtctcgccccgtgatgcccggcgtgatggacccc
tcccgcaagaggcccgcgccccaacagatccagcaggttcagcagcagaaccgcaaccag
cacacaaagaagaagaagatggctgataaaattctacctcagaggatcagggaactggtc
cccgagtctcaggcttacatggatctgctggctttcgagaggaagctggatcagaccatc
atgcgcaagaggctggacattcaggaagccctgaagaggcccataaagcaaaagagaaaa
cttcggatcttcatatccaacaccttcaacccagcaaagcctgatgcagaggatggagag
ggcacagttgcatcatgggagctgcgtgttgaggggcgtctgctggaagattcggctgtg
tccaagtatgaggccaccaagcagaagaggaagttctcctctttcttcaagtctctggtg
atcgagctggacaaagacctgtacggcccagacaatcacctggtggagtggcacaggact
gccaccacccaggagactgatggtttccaggtgaagagacccggtgatgtgggggtccgc
tgcaccgtcctgctgatgctggactaccagccccctcagttcaagctggacccccggctg
gctcgtatgctgggcatccacacccaaaccagacctgtcatcatccaggctctgtggcag
tacgtcaagacccacaagctccaggaccctcatgagcgcgagttcatcaactgtgacaaa
tacctgcagcagattctaataccagagagaccaacacaccccaggataaaaaaacagaac
gggacagagatctttgagactcagcgaatgaagttctctgagatccctcagcgtctgcat
gccctcctgatgcccccagagccaatcatcatcaaccatgtgatcagtgtggaccctaat
gaccaaaagaagacggcttgctacgacattgacgtggaagtggacgacacgctgaagacc
cagatgaactccttcctgctgtccactgctagtcagcaggaaatagccggactggacaac
aagatccatgaaaccattgagaccataaaccagctgaagacccagagagagttcatgttg
agttttgccagagaccctcagggctttatcaacgactggctgcagtcccagtgccgagac
ctcaagaccatgaccgatgtggtcggaaacccagaagaagagcggagagccgacttttac
taccagccgtgggctcaggaggccgtctgccgctacttctactccaaggtccagcagagg
aggcaggagctggagacggcgctcggcatcaggaacacctaa
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