Pseudochaenichthys georgianus (South Georgia icefish): 117448072
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Entry
117448072 CDS
T09629
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117448072 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117448072 (cnot4a)
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117448072 (cnot4a)
04121 Ubiquitin system [BR:
pgeo04121
]
117448072 (cnot4a)
Enzymes [BR:
pgeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117448072 (cnot4a)
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
117448072 (cnot4a)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117448072 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117448072 (cnot4a)
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117448072 (cnot4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-RING_2
zf-C3HC4_2
Med7
RDD1
zf-C3HC4
Torus
DZR_2
Motif
Other DBs
NCBI-GeneID:
117448072
NCBI-ProteinID:
XP_033941061
LinkDB
All DBs
Position
6:complement(33950535..33962759)
Genome browser
AA seq
793 aa
AA seq
DB search
MSHSPEMKDDLMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKINPSFLQPPACGTEKSKSKSNSTQRSNSSNGKDGWPTLSGHNKLSNGLSEDRKS
PPLLDFLDQEGITSDGLDTDMGSAQCSALSPFSSNCDSNSPSDKPESIGMMNGETFQQMA
CSDSPSPPPGLSKPSLVVPISMSDLSARSPFEGAAAESQSLFSDNSNFRHPNPLPAGLPP
FPSSPRSNSDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSSKQQDDDLGFDPFDVTR
KALADLIEKELSVQDQCPLSPGLLSHSAHSHGLPPMNPNASHHFPSGLPRLPQLHHRAIF
SSFSFPGSQHSQHSQQQLSSRHPWMGVPTRNNLTHLNHSASAASHSNYLDLNLPPQHNTG
LGGIPISENSGSIDGLNVKEWQDGLRALLPNININFGGLPISSSSSSSSSSNSVNHIGGP
MGPAGLSHSLSWESPASWMDPAIITGIPASAGNNIDCLQDDNPPHWLKSLQALTEMDGPA
CSAMSAPPQPLHSSLLDAHIPLHHRGASSWAPYMHPPNPASQFHSPPPGFQTAFRPPGQP
ATELLQSAAVDRH
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccctgagatgaaggacgacctcatggagtgccctctgtgtatggagccg
ctggagattgatgacgtcaacttcttcccctgcacctgcggctatcagatctgccgcttc
tgttggcatcgcattcgcacagacgagaatggcctctgccccgcctgcagaaagccttac
ccagaggaccccgctgtgtacaagcccctgtcacaggaggagatccaaaggataaagaac
gaaaagaagcagaaacagaacgagaagaagcagaaggtgacagaaaaccgaaagcacctg
gccagtgtccgagtggtgcagagaaacctggtgttcgtggtcgggctctcgcagcgactc
gccgacccagaggtcctaaaacgaccagaatattttgggaggtttgggaaaatccataaa
gtggtcatcaacaatagcacatcatacgcagggtcacaggggccgagtgccagcgcttat
gtcacttacatccgctctgaagacgcgttaagagcaatacagtgtgtaaacaacgtggtc
gttgatgggagaacactcaaggcttctttaggcacaacaaagtactgcagttactttctt
aaaagtatgcagtgtccaaaacctgattgtatgtatctacatgagctgggggatgaagca
gctagctttacaaaagaggaaatgcaggcgggaaaacatcaagagtatgagcagaaactc
ctccaagacctctataaaattaaccctagctttctacaacctccagcatgtggaaccgag
aagtcaaagagtaaatccaactccacacagagaagcaacagtagcaacggtaaagatggc
tggccgacgctgtcaggacacaacaaactgtccaatgggctctcagaggaccgcaagtct
cctccgctgctagactttctagaccaagaaggtatcacttcagacgggctcgacacagac
atgggttctgctcagtgttctgcgctgtcccccttctcctctaactgcgacagtaacagt
cccagtgataaaccagagtcgatcggtatgatgaacggagaaactttccaacagatggcc
tgcagtgactccccctctccccccccgggtctatcaaagcccagcctggtagtgcccatc
agcatgtcagacctcagcgcacgctcacccttcgagggagcggcagccgagtcccagtcg
ctcttttcagacaacagcaacttcagacatcctaaccctctccccgccggcctccccccc
ttccccagctccccccgcagcaactcggactggcccatgacccccgaaccacagagcctt
ttcacgtcagacacaataccagtgtcttcctccacagactggcaggcggcctttggcttc
ggctcgtccagcaaacagcaggacgacgacctgggcttcgatccgtttgacgtcactcgt
aaagccctggccgacctgatcgagaaggagctgtcggtgcaggatcagtgccccttgtcc
ccggggctcctctcccacagcgctcacagtcacggcctgccccccatgaacccgaacgcc
tcgcaccacttccccagcggcctgcctcgcctcccccagctccaccacagagccatcttc
agctccttcagtttccccggcagtcagcacagccagcacagccagcagcagctgtcctcc
agacacccctggatgggcgtccccacacgaaataacctcacacacttgaaccactcagcc
agtgctgcctcacacagtaattacctggacctgaatctgccgcctcagcacaacacaggg
ctgggcgggatccccatctcagagaacagtggctctatagacggcttaaatgtgaaagag
tggcaggacggcctcagagctctgctgcccaacatcaacatcaacttcgggggcctccca
atctcctcttcctcttcatcctcctcatcctccaacagtgttaaccacatcgggggcccg
atggggccggcaggtctctcccacagcctgagctgggaaagcccagccagctggatggac
cctgccatcatcacaggtatcccggcgtcagcggggaacaatatagactgtctccaggac
gacaaccccccccactggctcaagtctctgcaggctctcacagagatggacggtccggcc
tgctctgcgatgtccgcccccccccagcccctccacagcagcctcctggacgcccacatc
cccctccaccacagaggcgctagcagctgggctccctacatgcacccccccaaccctgcc
agccagttccactcccctccccccggcttccagaccgccttcagaccccccggacagccg
gccacagagctgctacagagtgccgcggtggaccgccactga
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