Pseudochaenichthys georgianus (South Georgia icefish): 117455243
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Entry
117455243 CDS
T09629
Symbol
exosc7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117455243 (exosc7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117455243 (exosc7)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117455243 (exosc7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
117455243 (exosc7)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
117455243
NCBI-ProteinID:
XP_033950556
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Position
11:16065022..16071738
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AA seq
291 aa
AA seq
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MATVQVSEAEKVYILHGIRDDLRVDGRGCEDYRHMEIETDVVSNTDGSAKVTLGDTAVLV
GVKADIGKPRPMVPNEGYVEFFVDCSANATPEFEGRGGEELGTELSNTLYKVFNNKHSVD
LKSLCISAGEHCWVLYVDVLLLQCDGNLYDAISVAIKAALFNTKIPRVHISADEEGGKEI
ELSDDPYDCVRLNVENVPCIVTLCKVGHRHVVDATLQEKACSVASLIISVTHKGTITCTR
KVGGGSLDPESIFEMTEAGKRVGKALHAPLMKLLQQEESLGKARQKVGFLG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagtacaagttagcgaggctgaaaaggtgtatatccttcatggtatacgggat
gacttgcgagtggacggaagaggctgtgaggactacagacacatggaaatagagactgat
gtggtgtctaacacagacggatcagccaaagtcacactgggggacacggcggttctagtc
ggggttaaagctgacattggaaaaccgaggcccatggtgccaaatgaaggctacgtggag
ttctttgttgactgctcagccaatgcaacccctgagtttgagggcagaggaggcgaggag
ctaggcacggagctgagtaacacactctacaaagtcttcaacaacaaacacagtgtggac
ctgaagagcctgtgtatcagtgcaggagagcactgctgggtcctctatgtggacgttctg
cttttgcagtgtgatggaaacctttacgatgccatctcagtagccatcaaggctgctctc
ttcaacacaaaaattcccagagtgcacatatcggccgacgaggaaggagggaaggaaatt
gagctgtcagacgacccttatgattgcgtgagactcaatgtagaaaacgttccttgcatt
gtgacgttgtgcaaggtgggccacaggcacgtggtggatgcgactctgcaggagaaggcc
tgctctgtggccagcctgatcatatctgtcacacacaagggcacgatcacctgcaccagg
aaggtgggcggaggcagcctggatccggaaagcatctttgaaatgacagaggcaggtaaa
cgtgtcgggaaggccctccatgctccgctcatgaagctgctgcagcaggaggagagtttg
gggaaagcacgacagaaagttggcttccttggttaa
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