Pseudochaenichthys georgianus (South Georgia icefish): 117458400
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Entry
117458400 CDS
T09629
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117458400 (scn1lab)
Ion channels [BR:
pgeo04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117458400 (scn1lab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
Zip
Spem1
FUT8_N_cat
FraC
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
117458400
NCBI-ProteinID:
XP_033954741
LinkDB
All DBs
Position
2:complement(5509960..5537040)
Genome browser
AA seq
2032 aa
AA seq
DB search
MAQLLVPPGPDSFRPFVPESLAAIERRIAEEQARRPRADRRVDSDDENGPKPNSDLEAGK
SLPFIHGDTPPRLVSTPLEDLDTFYSNQKTFIVLNRGKTIFRFNATPALYILSPFNPLRR
VAIRVLVHSIFSILIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRWPIGNNATNGSNVTADDTFF
SHSLLDSNATFGQNTTENYFNWTEYISNDTNYYFLPGRRDALICGNGSGAGLCPEGFICM
KAGRNPDYDYTSFDSFSWAFLSLFRLMTQDFWENLYQQTLRAAGKPYMIFFVLVIFLGSF
YLVNLILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYS
ERGARASESSSGMSKLSSKSAKERRNRRKKRKQREEEEERGGRDKFHKSESEDSIKRTSF
RFSIDANRLSYEKRCSSPNQSLLSIRESLFSPRRNSRASLFSFRGRARDMGSENEFADDE
HSTFEESDSRRGSLFLPRRLERRCSAVSQTSLGAPRFMLPANGKMHCAVDCNGVVSLVGG
TSVTTSPVGVLLPEGTTTDAELKKRRFRHPSMDYLDEPVARQRAMSVASILTNTMEELEE
SRQKCPPCWYRFSNTCLIWDCYPAWLKIKDVVCTVVMDPFVDLAITICIVLNTLFMAMEH
YPMTKEFNSVLSVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSLMELGL
ANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGM
QLFGKSYKECVCKISDSCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCL
IVFLMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQRGIAFVKSM
LRQFFQSLCFGGKGGKGGEGSGLTEQSKPLDELHSNGKDNCISNHTSVEITRDPSVVYVT
EGNGRPGGGLVIEVGVDTAGKYPLEECDYMSFIHNPTLTVTVPIAVGESDFENPNTEDFS
SDSSDVEGSKETLVFFQKIDIEPHPPSSSEGSTVDIRPPGDGVDSVELEPEESLEPEACF
TEGCVRRFQCCQVNEEEEHFKSWWTLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDIY
IEQRRTIKTVLEYSDKVFTYIFILEMLLKWTAYGFVKYFTNAWCWLDFLIVDVSLVSLVA
NFMGYSEITAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIF
SIMGVNLFAGKYYYCVNTTNDEIFPIDVVNNKSECLNLVNDSARWRNVKINFDNVGAGYL
ALLQVATFKGWMDIMYAAVDSRNLEDQPEYEVNLYMYLYFVIFIIFGSFFTLNLFIGVII
DNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPANEFQGCVFDFITKQAF
DIVIMILICLNMVTMMVETDDQTKETALMLYRINLVFITLFTGECVLKMISLRHYYFTIG
WNIFDFVVVILSIVGMFLSEVIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFAL
MMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTS
AGWDRLMAPILNKREPDCDSQMEHPGNNYKGNCGNPSVAIFFFVSYIIICFLIVVNMYIA
VILENFSVATEESAEPLSEDDFEMFYEVWERFDPGATQFMEYSKLSDFADALDPPLRMPK
PNMLQLISMDLPMVSGERIHCLDILFAFTKRVLGESGEMDVLRGQMEERFMASNPSKVSY
EPITTTLRRKQEDIAALIIQRAFRRFLFCSTMKKASALYKEQLKEGMRDPDKDVMVICKF
SEMSTSEKTDMTPSTASPPSYNSVTKSDKDKYEKENKGKDRKKLKFMNRNKK
NT seq
6099 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccgcccggacctgacagcttccgccccttcgtccccgagtcg
ctggccgccatcgagaggcgcatcgccgaggagcaggcccggagaccacgggcggaccgc
cgcgtcgacagcgatgatgagaacgggcccaagcccaacagcgacttggaggcggggaaa
tctctccccttcatccacggtgacacccctccccgcctggtgtccacccctctggaggac
ttggacaccttctacagcaatcagaagaccttcatagtattgaatcgcgggaagacaatc
ttccgtttcaacgccactcctgccttgtacatcctaagcccattcaaccctctgaggagg
gtagccattagagttttagtacactcgattttcagcatcttgatcatgttcaccatcctg
accaactgtgctttcatgaccctcagtaaccccccagaatgggccaagaatgtagagtac
acattcacagggatttacacctttgagtccctcataaagatcctggccaggggcttctgt
gtggggaagttcactttcctgcgggacccgtggaactggctggatttcagtgtcatcctc
atggcatatgtcacagagtttgtggacctgggcaatgtctcagcactgcgaaccttcagg
gttctgcgagccttgaaaactatatcagtcatcccaggcttgaagaccatcgtcggcgcc
ctcatccagtcggtgaaaaagctgtcggacgtcatgatcctcaccgtgttctgcctcagc
gtcttcgcgctcatcggcctgcagctcttcatgggcaacctgaggcagaagtgtgtgcgc
tggccgatcggcaacaacgccaccaacggcagcaacgtcaccgccgacgacacgtttttc
agccactccctgctggatagcaacgccacgtttgggcagaacaccacggagaactacttc
aactggacagagtacatcagcaatgataccaactactatttcctccctggccgaagggat
gctctgatctgtgggaacggcagcggcgctgggctctgtccagagggctttatatgtatg
aaagccggccgcaaccccgactacgactacaccagcttcgactccttcagctgggccttc
ctgtccctgttcagactcatgacccaggacttctgggaaaacctgtatcagcagactttg
cgcgcggcaggaaagccctacatgatcttcttcgtgctggtgatcttcctgggctccttc
tacctggtgaacctgatcctggccgtggtggccatggcgtacgacgagcagaaccaggcc
accattgaggaggcgcagcagaaggaggaggagttccaggccatgctggagcagctgaag
agacagcaagaggaggctcaggttgccgcggcagcagccacggagagcggagagtacagc
gagaggggggcccgggcctccgagtcctcctcggggatgtcaaagctcagctcgaagagc
gccaaggagcgacgcaacaggcggaagaagaggaagcagagggaagaggaggaggagagg
gggggccgcgacaagttccacaagtctgagtccgaggacagcatcaagagaaccagcttc
cgcttctccatcgacgccaacagactctcttatgagaagagatgctcctcgcccaaccag
tctctcctcagtatccgagaatccctcttctcccctcggaggaacagccgcgccagcctg
ttcagcttccggggccgggcacgcgacatgggctccgagaacgaattcgccgacgacgaa
cacagcaccttcgaggagagcgacagccgccgggggtcgctgttcttgccgcggcgtctg
gagcgccgctgcagcgctgtgagccagaccagcctcggggcgccgcgcttcatgctgccc
gccaacgggaagatgcactgcgccgtggactgcaacggagtcgtgtctctggtcggagga
acttctgtcacgacctcgcctgtaggtgtcctgctgcccgagggcacaactacagatgca
gagctgaagaaacgacgcttccgccatccatccatggattatttagacgaaccagtggca
aggcagagagccatgagcgtggccagtatcctcaccaacaccatggaagagctcgaagag
tcgagacagaaatgcccgccctgctggtatagattctccaacacctgtctgatctgggat
tgttacccagcatggctgaaaataaaagacgtggtctgcacggtggtcatggacccgttt
gtggatctggccatcacaatttgcatcgtcctcaacacccttttcatggccatggagcat
taccccatgacgaaagaattcaacagcgtgctctcagttggaaacctggtgttcaccggc
atcttcacagcagagatgtgcttcaagatcatcgccctggatccctactactacttccag
gagggctggaacatctttgatgggatcatcgtgagtctgagtctgatggagctcggcttg
gccaacgtggaaggcctgtctgtgctcaggtccttcagattgctgagggtcttcaaactg
gccaagtcgtggcccactttgaacatgctgatcaagatcatcgggaactcggtgggcgcg
ctggggaacctgactctggtgctggccatcatcgtcttcatcttcgccgtggtgggcatg
cagctgtttggcaagagctacaaggagtgcgtgtgcaagatttcggacagctgcgagctg
ccccgctggcacatgcacgacttctttcactcgttcctcatcgtgttccgggtgctgtgc
ggggagtggatcgagaccatgtgggactgcatggaggttgcgggacaaagcatgtgcctg
attgtgttcctgatggtcatggtcattggaaacctggtggtgctaaacctgttcctggct
ctcctcctgagctccttcagcgccgacaacctggcagcgaccgacgacgacagcgagatg
aacaacctgcagatcgccgtgggtcggatccagcggggcattgcgtttgtcaaatccatg
ttgcgccagttctttcagagcctctgcttcggcggtaagggcggtaagggcggtgagggc
tccggcctgacggagcagagcaaaccgttggacgagctgcacagcaacggcaaggacaac
tgcatctccaaccacacctccgtggagatcaccagagaccccagtgtggtgtacgtgacg
gagggcaatgggcggccaggaggggggctggtcattgaggttggtgtggacactgcaggg
aagtacccgctggaggaatgtgactacatgtcatttattcataaccccaccctgacagtc
accgtgcccatcgctgtgggcgagtcggactttgagaacccgaacacggaagatttcagc
agcgactcgtcggacgtggagggcagcaaagagaccctcgtcttcttccagaagattgac
atagagccccaccctccgagctcatcggaggggagcacggtggatatccggccccctgga
gacggggtggattcggtggagctggagccagaggagtcgctggaaccagaggcgtgcttc
acagagggctgtgtgaggaggttccagtgctgccaggtcaacgaggaggaagagcacttt
aagagctggtggacactcaggaaaacctgcttcatcatagtggagcacaactggtttgag
tccttcatcatattcatgatcctgctcagcagcggagccctggcttttgaggacatttac
atcgagcagcggaggaccatcaagacggtgctggagtactcagacaaggtcttcacctac
atcttcatcctggagatgctgctgaagtggacggcttacggcttcgtcaagtatttcacc
aacgcctggtgctggctcgacttcctcatcgtagacgtgtccctggtcagcctcgtggcc
aactttatgggctactcggagatcaccgccatcaaatctctgaggacactgcgagccctg
cggcccctcagggccctgtctcggtttgagggcatgagggtggtggtgaacgcgctgctg
ggggccatcccctccatcatgaacgtgctgctggtgtgcctcatcttctggctcatcttc
agcatcatgggcgtcaacctgttcgcagggaagtactactactgcgtcaacaccaccaac
gacgagatcttccccatcgacgtggtcaacaacaagagcgagtgcctgaacctggtgaac
gacagcgcccgctggaggaacgtcaagatcaactttgacaacgtgggggccggttacctg
gctctgctgcaagtggccacatttaagggttggatggacatcatgtacgcagcggtggac
tctcggaatttggaggaccagcctgaatatgaagtgaacctctacatgtacctctacttt
gtcatcttcatcatcttcggctccttcttcaccctcaacctgttcattggtgtcatcatc
gacaacttcaaccagcagaagaaaaagtttggaggtcaggacatcttcatgacagaagag
cagaagaagtactacaacgccatgaagaagctgggctccaagaagccacagaaacccatc
ccccggcctgcaaacgagttccaaggctgcgtgttcgacttcatcacaaagcaggccttc
gacatcgtcatcatgatcctcatctgcctcaacatggtgaccatgatggtggagacggac
gaccagacgaaggaaactgccttaatgctctaccggatcaacctggtcttcatcacgctc
ttcaccggcgagtgtgtgctcaagatgatctccctgcgccactactacttcaccatcggg
tggaatatattcgactttgtggtggtgatcctgtccattgtaggtatgtttttatccgaa
gtcatcgagaagtactttgtgtccccgacgctgttccgagtgatccgtctggccaggata
ggtcgcatcctgcgcctgatcaaaggtgccaaaggcatccggacccttctcttcgcgttg
atgatgtccctccccgccttgttcaacatcggactcctactcttcctggtcatgttcatc
tacgccatctttggcatgtccaacttcgcctacgtgaagcgagaggcggggatcgacgac
atgttcaacttcgagacgttcgggaacagcatgatctgtctgtttcagatcaccacgtcg
gcggggtgggaccggctgatggcccccatcctgaacaagagggagcccgactgtgacagc
cagatggagcacccgggcaacaactacaaaggtaactgcggcaacccgtcggtggccatc
ttcttcttcgtcagctacatcatcatctgcttcctcatcgtggtcaacatgtacatcgcc
gtcatcctggagaacttcagcgtggccacggaggagagcgccgagccgctgagcgaggac
gactttgagatgttctacgaggtgtgggagcgcttcgaccccggcgccactcagttcatg
gagtacagcaagctgtctgactttgctgacgccctggacccgccgctgcgcatgcccaaa
cccaacatgctccagctgatctccatggacctacccatggtgagcggcgagcgcatccac
tgcctggacatcctgttcgccttcaccaagcgcgtgctgggcgagagcggcgagatggac
gtgctgcgcgggcagatggaggagcgcttcatggcctccaacccctccaaggtgtcctac
gagcccatcaccaccacgctgcgccgcaaacaggaggacatcgcggcgctcatcatccag
agagccttccgccgcttcctgttctgcagcaccatgaagaaggcctccgccctctacaag
gagcagctgaaggagggcatgcgggaccccgacaaggacgtcatggtcatctgcaagttc
agcgagatgtccacctcggagaaaacggacatgacgccctccacggcctccccgccctcc
tacaacagcgtgaccaagtcggacaaggacaaatacgagaaggaaaacaaagggaaggac
cggaaaaaattaaagtttatgaataggaacaaaaaataa
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integrated database retrieval system
