KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117462286
Entry
117462286         CDS       T09629                                 
Symbol
col6a2
Name
(RefSeq) collagen alpha-2(VI) chain
  KO
K06238  collagen type VI alpha
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04510  Focal adhesion
pgeo04512  ECM-receptor interaction
pgeo04518  Integrin signaling
pgeo04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117462286 (col6a2)
   04518 Integrin signaling
    117462286 (col6a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117462286 (col6a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117462286 (col6a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pgeo04147]
    117462286 (col6a2)
   00536 Glycosaminoglycan binding proteins [BR:pgeo00536]
    117462286 (col6a2)
Exosome [BR:pgeo04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   117462286 (col6a2)
Glycosaminoglycan binding proteins [BR:pgeo00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117462286 (col6a2)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   117462286 (col6a2)
SSDB
Motif
Pfam: VWA Collagen VWA_2
Other DBs
NCBI-GeneID: 117462286
NCBI-ProteinID: XP_033960334
LinkDB
Position
17:13978056..13994875
AA seq 1013 aa
MLGLEVIALCLLFGALAHGQQSECSKKNECPIEVYFAIDTSETIALQEPPPGALVEKIKQ
FTEEFALRLKDAELKGVVQVNWNMGGLHFSQKQEVFSRMASMKDFINGVRGIKYLGKGTH
TDCAITNMTQEILRTAASSPKALRFAVIITDGHVTGSPCGGIKVASERARDVGIRMFVVA
ASKNVDETGLKEIANSPADVYRRDFKAVDIIQGRVAIHTATIDRIIQTMEHLAFVDCYKV
SCLETPGPDGPLGHRGQKGAKGDNGDPGPKGLGGRQGDPGIEGPIGQPGTKGDHGHIGEK
GEIGTQGKKGVGGIAGRNGTDGQKGKIGRIGSPGCKGDPGNIGPDGHPGDVGERGLGGTD
GEKGDGGRPGRDGPSGSSGDGGPKGERGSAGAPGFPGLKGNPGTPGLAGPRGEGGRRGDY
GPKGTQGTDGGKGDKGEMGPEGLRGLAGESGNKGTTGDNGLPGPRGPPGSSGEAGRNGTR
GDPGDAGPRGESGLLGPKGDLGRPGFSYPGPRGSSGERGGKGNNGPRGGRGDCGQKGDPG
SKGTFGGAGDPGSQGEPGLRGTRGELGRDGNPGPEGDPGLTECDVMNYVRETCGCCDCEK
ICGPLDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSMAKDPKSETGTRVGVVQYSHSG
TFQAIKLDDPKIDSLSAFKDAVKRLEWIAGGTWTPSALKYAYDNLIRDSRRAKANVTVVV
ITDGRFDPRDDDSLLTYLCSDPSVDVSAIGIGDMFDQIEENESLKSIACQKDGRVMGMRR
FADLVAEEFIDKIEHVICPDPITKCPDLPCKSEPAVASCVQRPVDVVFMLDGSERMGLED
HRRAKEFIEKVASKLTLASGQTDNRNARFALLQYGSPTEQRVEFALTHNLTVIYDALSKV
NYMDSSSALGSAIIHAVNNLVIPRQGDRLVRRNAELAFVFITDGITASEQLDEGVSAMRR
AEGVPTVIAMGSDTNEEVLRKVSLGDMSAIFRGVDYSVLNNPSFFERFIRWIC
NT seq 3042 nt   +upstreamnt  +downstreamnt
atgttggggttagaggtcatcgcgctctgtcttctttttggagccctggcgcacggccag
cagtcagagtgcagcaagaagaatgaatgtcccatcgaagtgtacttcgccatagacaca
tctgagaccatcgccctgcaggagccgccccctggcgcgctggtcgaaaaaatcaagcaa
ttcactgaggagtttgcactgcgtctgaaagatgctgaactcaaaggtgttgtgcaagtc
aactggaacatgggtggactgcacttctcccagaaacaggaagtgttcagtagaatggca
tccatgaaagatttcatcaatggcgtcagaggaatcaaatacctgggtaagggcacccac
accgactgcgccatcaccaacatgacgcaggaaatactgcgcacggcggcctcttcccca
aaagccctccgattcgctgtgatcatcaccgacggccacgtgactggaagcccgtgtggg
ggcatcaaagtggcgtcagagagggctcgcgacgtgggcatccgcatgttcgtcgtggcg
gcatcgaagaacgtggatgagacggggctgaaggagatcgccaactctcccgctgacgtc
tacaggagggacttcaaggctgtggatattatccagggcagagttgccatacatacagcc
accattgaccgcatcatccaaaccatggaacatctggcgtttgtcgattgttacaaagtg
tcctgtctggagaccccagggcctgacggtccactaggccacagaggacagaaaggagct
aaaggggacaacggagacccaggtcctaaaggattgggcggtcgccaaggagaccctggt
atcgagggtcccatcggtcagcccggtaccaagggagatcacggtcatataggcgagaag
ggagagatcggaactcaggggaaaaagggcgttggtggcatcgcagggcgcaacggaaca
gatggacagaagggtaaaatcggacgaattggctctcctggctgcaaaggagacccaggc
aacataggtcctgatggtcacccaggagacgttggtgagcgtggtttaggtggaactgac
ggagaaaagggggatggcggtcgccctggaagagatggtccttctggctcctccggagat
ggtggacctaagggagagagaggaagtgctggagcgcctggcttccctggactgaaagga
aatccaggaacccctggacttgctggaccgagaggagagggggggagaagaggagactat
gggccaaaggggactcaggggacagatggaggaaagggagacaagggtgaaatggggccg
gagggtttgagagggcttgcaggtgaatcaggaaacaaaggaacaacgggagacaacgga
cttccaggccccaggggaccaccagggtcatcaggcgaggccgggagaaatggtaccaga
ggtgaccctggtgatgccggaccacggggagaatctggactgcttgggccaaagggagat
ctaggaagacccggcttcagctaccccgggccgagaggatcatcgggtgagagaggaggg
aagggcaacaatggacctcgtggcggtagaggagactgcgggcaaaagggtgatccagga
agcaaaggaacttttggaggagcaggtgatccaggatctcagggtgaacccggcctaaga
gggacaagaggagagcttgggcgtgatggaaatcctggtcctgagggagaccccggcctc
actgaatgtgatgttatgaactacgtcagggaaacgtgtgggtgctgtgactgtgagaaa
atctgcggacccctggacattgtgtttgtgattgacagctcagagtcagtgggtctgacc
aacttcaccctggagaagaactttgttatcaacaccatcaacagactggggtccatggcc
aaagaccctaaatcagaaacaggcacacgcgtgggcgttgttcagtacagtcacagtgga
acattccaggccatcaagctcgacgaccccaagatcgattcactgtctgctttcaaggac
gcagtgaagcgtttggagtggatcgctggaggaacatggactccatccgccctgaagtac
gcctacgacaacctgatcagggacagccgcagagccaaagccaacgtcaccgtggttgtc
atcacagacggacgcttcgaccccagagatgacgactcgctgctcacctacctctgcagc
gatcccagcgttgatgtgagtgccatcggtatcggagacatgtttgaccagatagaggag
aatgagagtctgaagagcatcgcctgccagaaggacggcagggtgatgggcatgaggcgc
tttgcagacctggtggccgaggagttcatcgacaagatagaacatgtgatctgcccagat
cccatcaccaaatgcccagatctcccttgtaaatcagagccagcagtggctagctgcgtt
cagagaccagtggatgtggtgttcatgctggatggctctgagaggatgggattggaggac
caccgcagggccaaagagttcatcgagaaagtggctagcaaactcaccctggctagcggc
cagacagacaataggaacgcccgctttgctctgctgcagtacggcagccccacagaacag
cgggtggagttcgcgctcacgcacaatctcacagtgatctatgatgcgctgtccaaggtg
aactacatggactcctcttctgctctgggcagtgctatcatccatgctgtcaacaacctg
gtgattccacggcagggagaccgcttggtccgtcgtaacgctgagctggcgtttgtgttc
atcaccgatggcatcacagccagcgagcagctggacgagggcgtgtctgccatgaggcga
gcggaaggcgttcccacggttatcgccatgggatcagacacaaacgaagaggtgctgcgg
aaggtgtcgctaggggacatgtcggccatcttcaggggagttgactacagcgtgctgaac
aacccctcgttctttgagcgctttatccgctggatatgctag

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