Pseudochaenichthys georgianus (South Georgia icefish): 117463801
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Entry
117463801 CDS
T09629
Symbol
capn1
Name
(RefSeq) calpain-1 catalytic subunit
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04141
Protein processing in endoplasmic reticulum
pgeo04210
Apoptosis
pgeo04217
Necroptosis
pgeo04218
Cellular senescence
pgeo04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117463801 (capn1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
117463801 (capn1)
04217 Necroptosis
117463801 (capn1)
04218 Cellular senescence
117463801 (capn1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117463801 (capn1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pgeo01002
]
117463801 (capn1)
Enzymes [BR:
pgeo01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
117463801 (capn1)
Peptidases and inhibitors [BR:
pgeo01002
]
Cysteine peptidases
Family C2: calpain family
117463801 (capn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_1
EF-hand_6
EF-hand_8
EF-hand_7
EF-hand_5
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
117463801
NCBI-ProteinID:
XP_033962155
LinkDB
All DBs
Position
18:complement(5599587..5636208)
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AA seq
704 aa
AA seq
DB search
MEPIVATGMAAKLRSQWDRDEGLGQNHKAVKFLGQDYENLKAQCLQGRRLFEDHLFACAT
SSLGFDELGPRSAKTSGVRWMRPTEFCKCPEFIVDGATRTDICQGSLGDCWLLAAIASLT
LNDNLLHRVVPHGQGFQQGYAGIFHFQFWQFGEWVEVVIDDRLPVKDGKLLFVHSAEGTE
FWSALLEKAYAKLNGCYEALSGGSTSEGFEDFTGGVTEMFDLSKAPSDLYSIISRAIERG
SLLGCSIDITSSGDKEAVTFKKLVKGHAYSVTGVDEVVSRGNKTKLVRIRNPWGEVEWTG
AWSDNSREWDNVDRSVRSRLQNRSEDGEFWMSFSDFLREFSRLELCNLTADALQSSQPKK
WSSSLYQGEWRRGSTAGGCRNFPATFWLNPQFKITLQHPDTPGQSDCSFLVGLMQKDRRK
KRREGKDMETIGFALYEIPKEFKGSSGVHLKRDFFLTHGSSARSELFVNLREVSSRLSLP
AGEYIIVPSTFEPKIEADFCLRVFSEKPADSEELDDEVKAELPAEIELDENQIDASFKNL
FRQLAGPDMEISLKELQTILNRIIGKHKDLKTDGFTKEACRSMINLMDTDGSGKLGLTEF
HVLWEKIKRYLIIFRQFDLDKSGTMSSYEMRMALESAGFKLTNQLFQLIILRYTEADMAV
DFDNFVTCLVRLETMFKTFQTMDTDSDGVMSLNFTQWITLTMFA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggagcccattgtcgccacgggtatggccgccaagctgaggagccagtgggaccgtgat
gaaggtctgggacagaatcacaaggccgtgaagtttttgggtcaggactacgagaatctg
aaggcccagtgcctccagggcaggaggctgtttgaggatcatttgttcgcttgtgccaca
tcgtctctgggattcgacgagctcggccccagatccgccaagacctccggcgtccgctgg
atgaggcccacggagttctgcaagtgccccgagttcatcgtagacggagccactcgcaca
gacatctgtcagggatctctgggcgactgctggctgctggcggccatcgcctcgctgacc
ctgaacgacaacctcctccaccgagtggttcctcacggacagggcttccagcagggatac
gccggcatcttccacttccagttctggcagtttggcgagtgggtggaggtggtgatcgat
gaccggctgccggtgaaggatgggaagctgctgtttgtccactcggcagaggggaccgag
ttctggagcgcactgctggaaaaggcctacgcaaagctgaacggctgttatgaggctctg
tcagggggcagtacgtccgagggctttgaggacttcacgggcggcgtgactgagatgttc
gacctgagtaaagccccctccgacctctacagcatcatcagcagggccatagagagaggg
tctctgctgggctgctccatagacatcaccagctccggggacaaggaggctgtgaccttc
aagaagctggtgaagggacacgcctactctgtgaccggtgtggacgaggtcgtctccaga
ggaaataagaccaagttggttcgcatcaggaacccctggggggaagtggagtggaccgga
gcgtggagcgacaactccagagaatgggacaatgtggatcgctccgtcagaagtcggcta
caaaaccgcagtgaggacggtgaattctggatgtccttcagtgacttcctgcgtgagttc
tctcgtctggagctctgcaacctgacggctgatgccctgcagagcagccagccgaagaaa
tggagctcgtctctgtatcagggcgagtggaggaggggcagcacggccggaggctgtagg
aacttcccagcaaccttttggctcaaccctcagttcaagattacactgcagcatcccgac
actcccggccaatcagattgcagcttcctggtgggcctcatgcagaaggaccggaggaag
aagaggcgggagggcaaagacatggagaccatcgggtttgccctctacgagattccaaaa
gagtttaagggcagctcaggcgtccacttgaagcgagactttttcctcacccacggctcc
agcgcccgctcagagctcttcgtcaacctgagggaggtcagctcgcggctgagtctgccg
gccggggagtacatcatcgtcccctccaccttcgagccgaaaatagaggccgacttttgc
ctcagagttttctctgagaagcccgcagactccgaggagcttgacgatgaagtaaaagct
gagcttccagcagagatcgagctggacgagaaccaaatcgatgccagcttcaagaatctc
ttcagacagctggcagggccggatatggagatcagcctcaaagagctgcaaaccatattg
aacaggatcatcggcaaacataaggacctgaagacagacggcttcacaaaagaggcttgt
cgcagtatgataaatctaatggacacggacggcagtgggaagctcggcctgacagagttc
catgtcctctgggaaaagattaagcgatacctgatcatcttcaggcagtttgacctggac
aaatcaggaaccatgagctcctacgagatgaggatggctcttgaatctgcaggttttaag
ctgaccaaccaactgttccagctgatcatcctgcgctacacggaggccgacatggcggtg
gactttgacaactttgtcacctgtctggtccgactggagaccatgttcaaaacctttcag
accatggacacggatagtgatggtgtgatgtccctcaacttcacgcagtggattaccctg
accatgtttgcctag
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